ALGORITHM FOR SEMIAUTOMATIC SORTING OF OBJECTS TO SPECIFIED TISSUE DOMAINS - AN AID FOR COORDINATING MORPHOMETRIC DATA WITH IDENTIFIED TISSUE-COMPONENTS

被引:3
作者
SIKLOS, L [1 ]
KUHNT, U [1 ]
机构
[1] MAX PLANCK INST BIOPHYS & CHEM, DEPT NEUROBIOL, W-3400 GOTTINGEN, GERMANY
基金
匈牙利科学研究基金会;
关键词
NUMERICAL DENSITY ON AREA; CLOSED CURVE; POINT RECOGNITION; AUTOMATIC ALGORITHM; QUANTITATIVE HISTOCHEMISTRY; MORPHOMETRY;
D O I
10.1016/0165-0270(93)90070-8
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
A personal computer-based technique was developed that reduces the extent of human efforts in obtaining data, like numerical density of profiles on area, describing the distribution of specific features of histological sections, e.g., density of synaptic profiles or of histochemical reaction products in specified tissue compartments. The procedure consists of (i) marking the objects to be counted, (ii) recording the borderlines of (reference) tissue domains of interest, and (iii) allocating the marked objects to the corresponding domains automatically. This automatic sorting of objects into defined tissue domains is achieved by an algorithm operating on two sets of coordinates: (i) coordinates of points that constitute the boundary of tissue domains (perimeter points) and (ii) coordinates of points marking the particular objects to be sorted. The principle of the sorting calculation is to construct 'segments' of the loop by lines parallel to the ordinate which pass through neighbouring perimeter points. The 'items' to be sorted are classified by the sign of marker flags allocated to each point depending on which side of the perimeter segment they are located. Segmentation and classification procedures are sequentially repeated along the entire perimeter of each domain specified by the operator which may result during the procedure in multiple changes of the sign of the flags. The internal or external location of each item finally is represented by the last sign of its flag. Objects, allocated to domains can be counted and processed further for numerical density determination.
引用
收藏
页码:217 / 224
页数:8
相关论文
共 20 条
[1]   SIMPLE MICROCOMPUTER SYSTEM FOR MAPPING TISSUE-SECTIONS WITH THE LIGHT-MICROSCOPE [J].
ALVAREZBUYLLA, A ;
VICARIO, DS .
JOURNAL OF NEUROSCIENCE METHODS, 1988, 25 (02) :165-173
[2]  
BORGERS M, 1981, ACTA HISTOCHEM, P327
[3]   THE IMPACT OF RECENT STEREOLOGICAL ADVANCES ON QUANTITATIVE STUDIES OF THE NERVOUS-SYSTEM [J].
BRAENDGAARD, H ;
GUNDERSEN, HJG .
JOURNAL OF NEUROSCIENCE METHODS, 1986, 18 (1-2) :39-78
[4]   RECENT STEREOLOGICAL METHODS FOR CELL BIOLOGY - A BRIEF SURVEY [J].
CRUZORIVE, LM ;
WEIBEL, ER .
AMERICAN JOURNAL OF PHYSIOLOGY, 1990, 258 (04) :L148-L156
[5]   THE IMAGE-COMBINING COMPUTER MICROSCOPE - AN INTERACTIVE INSTRUMENT FOR MORPHOMETRY OF THE NERVOUS-SYSTEM [J].
GLASER, EM ;
TAGAMETS, M ;
MCMULLEN, NT ;
VANDERLOOS, H .
JOURNAL OF NEUROSCIENCE METHODS, 1983, 8 (01) :17-32
[6]   THE NEW STEREOLOGICAL TOOLS - DISECTOR, FRACTIONATOR, NUCLEATOR AND POINT SAMPLED INTERCEPTS AND THEIR USE IN PATHOLOGICAL RESEARCH AND DIAGNOSIS [J].
GUNDERSEN, HJG ;
BAGGER, P ;
BENDTSEN, TF ;
EVANS, SM ;
KORBO, L ;
MARCUSSEN, N ;
MOLLER, A ;
NIELSEN, K ;
NYENGAARD, JR ;
PAKKENBERG, B ;
SORENSEN, FB ;
VESTERBY, A ;
WEST, MJ .
APMIS, 1988, 96 (10) :857-881
[7]   NOTES ON ESTIMATION OF NUMERICAL DENSITY OF ARBITRARY PROFILES - EDGE EFFECT [J].
GUNDERSEN, HJG .
JOURNAL OF MICROSCOPY-OXFORD, 1977, 111 (NOV) :219-223
[8]   STEREOLOGY OF ARBITRARY PARTICLES - A REVIEW OF UNBIASED NUMBER AND SIZE ESTIMATORS AND THE PRESENTATION OF SOME NEW ONES, IN MEMORY OF THOMPSON,WILLIAM,R. [J].
GUNDERSEN, HJG .
JOURNAL OF MICROSCOPY, 1986, 143 :3-45
[9]   THE EFFICIENCY OF SYSTEMATIC-SAMPLING IN STEREOLOGY AND ITS PREDICTION [J].
GUNDERSEN, HJG ;
JENSEN, EB .
JOURNAL OF MICROSCOPY-OXFORD, 1987, 147 :229-263
[10]   COMPARISON OF SEMIAUTOMATIC DIGITIZER-TABLET AND SIMPLE POINT COUNTING PERFORMANCE IN MORPHOMETRY [J].
GUNDERSEN, HJG ;
BOYSEN, M ;
REITH, A .
VIRCHOWS ARCHIV B-CELL PATHOLOGY INCLUDING MOLECULAR PATHOLOGY, 1981, 37 (03) :317-325