SHORT ALANINE-BASED PEPTIDES MAY FORM 3(10)-HELICES AND NOT ALPHA-HELICES IN AQUEOUS-SOLUTION

SHORT alanine peptides, containing 16 or 17 residues, appear to form alpha-helices in aqueous solution1-4. But the main spectroscopic analyses used on helical peptides (circular dichroism5 and nuclear magnetic resonance6-8) cannot distinguish between an alpha-helix (in which the ith residue is hydrogen-bonded to residue i + 4; ref. 9) a nd the next most common peptide helix, the 3(10)-helix10 (i --> i + 3 hydrogen-bonding). To address this problem we have designed single and doubly spin-labelled analogues of alanine-based peptides in which the nitroxide spin label forms an unbranched side chain extending from the sulphur atom of a cysteine residue. Here we report the circular dichroism, Fourier-transform infrared and electron-spin resonance spectra of these peptides under helix-forming conditions. The infrared absorbance gives an amide I' band with a frequency that is substantially different from that observed for alpha-helices. The electron-spin resonance spectra of doubly labelled helices show that the ranking of distances between side chains, around a single turn (residues 4-8), is inconsistent with an alpha-helical structure. Our experiments suggest that the more likely peptide geometry is a 3(10)-helix.