PHASE-DIAGRAM OF A MODEL PROTEIN-DERIVED BY EXHAUSTIVE ENUMERATION OF THE CONFORMATIONS

被引:53
作者
DINNER, A
SALI, A
KARPLUS, M
SHAKHNOVICH, E
机构
[1] Department of Chemistry, Harvard University, Cambridge
关键词
D O I
10.1063/1.467769
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
An understanding of the various states available to a polypeptide chain is important for a description of the protein folding process. We use a 16-monomer chain on a two-dimensional square lattice to model a protein. This makes it possible to enumerate all self-avoiding conformations from which any equilibrium thermodynamic quantity can be calculated. By varying the external conditions of temperature and average attraction, we construct a phase diagram for the model protein. It is found to have an extended coil state, a homopolymer-like disorganized globule state, and an organized frozen globule state that corresponds to the lowest energy (native) conformation. The exact model results agree well with analytical heteropolymer theory.
引用
收藏
页码:1444 / 1451
页数:8
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