STRUCTURAL AND ELECTRONIC FACTORS IN HETEROLYTIC CLEAVAGE - FORMATION OF THE CO(I) INTERMEDIATE IN THE CORRINOID/IRON-SULFUR PROTEIN FROM CLOSTRIDIUM-THERMOACETICUM

被引:25
作者
WIRT, MD
KUMAR, M
WU, JJ
SCHEURING, EM
RAGSDALE, SW
CHANCE, MR
机构
[1] UNIV NEBRASKA,DEPT BIOCHEM,LINCOLN,NE 68583
[2] YESHIVA UNIV ALBERT EINSTEIN COLL MED,DEPT MOLEC PHARMACOL,BRONX,NY 10461
[3] YESHIVA UNIV ALBERT EINSTEIN COLL MED,DEPT PHYSIOL & BIOPHYS,BRONX,NY 10461
关键词
D O I
10.1021/bi00015a042
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We have completed the first direct structural characterization of an enzyme-bound four-coordinate Co(I) intermediate, in this case for the corrinoid/iron-sulfur protein (C/Fe-SP) from Clostridium thermoaceticum. Extended X-ray absorption fine structure and X-ray edge spectroscopy of the active Co(I) state of the C/Fe-SP indicates a four-coordinate (distorted) square-planar structure where the best fit gives average Co-N(equatorial) distances of 1.87 +/- 0.01 Angstrom, corresponding to 4.2 +/- 0.3 ligands. The X-ray edge spectrum of Co(I) C/Fe-SP contains a moderate intensity 1s-4p + ''shake-down'' (SD) transition and no 1s-3d peak (where SD transitions are indicative of square-planar geometries). X-ray edge results for the methyl-Co(III) form, reported earlier [Wirt, M. D., Kumar, M., Ragsdale, S. W., & Chance, M. R. (1993) J. Am. Chem. Soc. 115, 2146-2150], are consistent with a base-off methylcobamide structure. The absence of a ligated 5-methoxybenzimidazole base in the methyl-Co(III) state is important since the base-off form is predicted to predispose the Co-C bond toward heterolytic cleavage to form the four-coordinate Co(I) species concurrent with methyl transfer. Additionally, we have examined first-derivative X-ray edge spectra of Co(I) C/Fe-SP, relative to edge spectra of a cobalt foil, as an indicator of effective nuclear charge on cobalt. The Co(I) C/Fe-SP edge position at 7720.5 +/- 0.3 eV is less than, but very close to, the value seen for the corresponding free Co(I) cobalamin. The observed reduction in effective nuclear charge for protein-bound cobamides in Co(I), Co(II), and Co(III) oxidation states may promote heterolytic Co-C bond cleavage by increasing the electrophilic nature of the donated methyl group and increase the nucleophilicity of enzyme bound Co1+ to facilitate remethylation of the cofactor.
引用
收藏
页码:5269 / 5273
页数:5
相关论文
共 34 条
[1]   SYSTEMATIC ANALYSIS OF STRUCTURAL DATA AS A RESEARCH TECHNIQUE IN ORGANIC-CHEMISTRY [J].
ALLEN, FH ;
KENNARD, O ;
TAYLOR, R .
ACCOUNTS OF CHEMICAL RESEARCH, 1983, 16 (05) :146-153
[2]   ABINITIO STUDIES OF X-RAY ABSORPTION-EDGE IN COPPER-COMPLEXES .1. ATOMIC CU2+ AND CU(II)CL2 [J].
BAIR, RA ;
GODDARD, WA .
PHYSICAL REVIEW B, 1980, 22 (06) :2767-2776
[3]   MECHANISM OF REDUCTIVE ACTIVATION OF COBALAMIN-DEPENDENT METHIONINE SYNTHASE - AN ELECTRON-PARAMAGNETIC RESONANCE SPECTROELECTROCHEMICAL STUDY [J].
BANERJEE, RV ;
HARDER, SR ;
RAGSDALE, SW ;
MATTHEWS, RG .
BIOCHEMISTRY, 1990, 29 (05) :1129-1135
[4]  
Bart J. C. J., 1986, ADV CATAL, P203
[5]   X-RAY ABSORPTION STUDIES OF MYOGLOBIN PEROXIDE REVEAL FUNCTIONAL DIFFERENCES BETWEEN GLOBINS AND HEME ENZYMES [J].
CHANCE, M ;
POWERS, L ;
KUMAR, C ;
CHANCE, B .
BIOCHEMISTRY, 1986, 25 (06) :1259-1265
[6]  
CHEN EF, 1990, J BIOL CHEM, V265, P12987
[7]  
GMUR NF, 1989, NATIONAL SYNCHROTRON
[8]   SPECTROELECTROCHEMICAL STUDIES OF THE CORRINOID IRON-SULFUR PROTEIN INVOLVED IN ACETYL COENZYME-A SYNTHESIS BY CLOSTRIDIUM-THERMOACETICUM [J].
HARDER, SR ;
LU, WP ;
FEINBERG, BA ;
RAGSDALE, SW .
BIOCHEMISTRY, 1989, 28 (23) :9080-9087
[9]  
HU SI, 1984, J BIOL CHEM, V259, P8892
[10]   POLARIZATION DEPENDENCE OF XANES OF SQUARE-PLANAR [NI(CN)4]2- ION - A COMPARISON WITH OCTAHEDRAL [FE(CN)6]4- AND [FE(CN)6]3- IONS [J].
KOSUGI, N ;
YOKOYAMA, T ;
KURODA, H .
CHEMICAL PHYSICS, 1986, 104 (03) :449-453