ERROR-PRONE REPLICATION OF REPEATED DNA-SEQUENCES BY T7 DNA-POLYMERASE IN THE ABSENCE OF ITS PROCESSIVITY SUBUNIT

被引:95
作者
KUNKEL, TA [1 ]
PATEL, SS [1 ]
JOHNSON, KA [1 ]
机构
[1] PENN STATE UNIV, DEPT MOLEC & CELL BIOL, University Pk, PA 16802 USA
关键词
FIDELITY; STRAND SLIPPAGE; DNA REPLICATION; ACCESSORY PROTEINS;
D O I
10.1073/pnas.91.15.6830
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We have examined the effect of thioredoxin, an accessory protein that confers high processivity to bacteriophage T7 DNA polymerase, on the fidelity of DNA synthesis. In the presence of thioredoxin, exonuclease-proficient T7 DNA polymerase is highly accurate. In fidelity assays that score errors that revert M13mp2 lacZ alpha-complementation mutants, error rates are less than or equal to 2.2 x 10(-6) for base substitution and less than or equal to 3.7 x 10(-7) and less than or equal to 4.5 x 10(-7) for frameshifts that revert mutations in the +1 and -1 reading frames, respectively. Rates are more than 10-fold higher during synthesis by polymerase.thioredoxin complex lacking 3' --> 5' exonuclease activity, demonstrating that frameshift as well as substitution errors are subject to proofreading. The contribution of thioredoxin to accuracy has been examined by comparing the fidelity of the exonuclease-deficient polymerase in the presence or absence of the accessory protein. Thioredoxin either enhances or reduces fidelity, depending on the type of error considered. In the absence of thioredoxin, T7 DNA polymerase is 3-fold more accurate for base substitutions and greater than or equal to 27-fold and 9-fold more accurate, respectively, for 1- and 2-nt deletion errors at nonreiterated nucleotide sequences. Higher fidelity for all three errors may reflect the inability of the polymerase to continue synthesis from the premutational intermediates in the absence of the accessory protein. In marked contrast, the rate for frameshift errors wherein one or more nucleotides has been added to a repeated DNA sequence increases 46-fold when thioredoxin is absent from the polymerization reaction. The error rate increases as the length of the repeated sequence increases, consistent with a model where strand slippage creates misaligned template-primers. Thus, replicative expansion of repetitive sequences occurs in the absence of a replication accessory protein.
引用
收藏
页码:6830 / 6834
页数:5
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共 32 条
  • [1] CLUES TO THE PATHOGENESIS OF FAMILIAL COLORECTAL-CANCER
    AALTONEN, LA
    PELTOMAKI, P
    LEACH, FS
    SISTONEN, P
    PYLKKANEN, L
    MECKLIN, JP
    JARVINEN, H
    POWELL, SM
    JEN, J
    HAMILTON, SR
    PETERSEN, GM
    KINZLER, KW
    VOGELSTEIN, B
    DELACHAPELLE, A
    [J]. SCIENCE, 1993, 260 (5109) : 812 - 816
  • [2] ABBOTTS J, 1993, J BIOL CHEM, V268, P10312
  • [3] ADLER S, 1979, J BIOL CHEM, V254, P1605
  • [4] BEBENEK K, 1993, J BIOL CHEM, V268, P10324
  • [5] BEBENEK K, 1989, J BIOL CHEM, V264, P16948
  • [6] KINETIC PARTITIONING BETWEEN THE EXONUCLEASE AND POLYMERASE SITES IN DNA ERROR CORRECTION
    DONLIN, MJ
    PATEL, SS
    JOHNSON, KA
    [J]. BIOCHEMISTRY, 1991, 30 (02) : 538 - 546
  • [7] GRIPPO P, 1971, J BIOL CHEM, V246, P6867
  • [8] HORI K, 1979, J BIOL CHEM, V254, P1598
  • [9] HORI K, 1979, J BIOL CHEM, V254, P1591
  • [10] HUBER HE, 1986, J BIOL CHEM, V261, P5006