SQUASH - COMBINING CONSTRAINTS FOR MACROMOLECULAR PHASE REFINEMENT AND EXTENSION

被引:99
作者
ZHANG, KYJ [1 ]
机构
[1] UNIV CALIF LOS ANGELES,DEPT CHEM & BIOCHEM,LOS ANGELES,CA 90024
来源
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY | 1993年 / 49卷
关键词
D O I
10.1107/S0907444992007911
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The constraints of correct electron-density distribution, solvent flatness, correct local shape of the electron density and equal molecules are combined in an integrated procedure for macromolecular phase refinement and extension. These constraints on electron densities are satisfied simultaneously by solving a system of non-linear equations. The electron-density solution is further filtered by a phase combination procedure. The non-crystallographic symmetry operations are refined by a rotation and translation space search and a least-squares minimization method, thereby reducing the chance of introducing systematic phase errors during averaging. The effect of each constraint on phase refinement and extension is examined. The constraints are found to work synergistically in phase improvement. Test results on 2Zn insulin are presented.
引用
收藏
页码:213 / 222
页数:10
相关论文
共 43 条
  • [1] ARGOS P, 1974, ACTA CRYSTALLOGR A, V31, P499
  • [2] THE STRUCTURE OF 2ZN PIG INSULIN CRYSTALS AT 1.5-A RESOLUTION
    BAKER, EN
    BLUNDELL, TL
    CUTFIELD, JF
    CUTFIELD, SM
    DODSON, EJ
    DODSON, GG
    HODGKIN, DMC
    HUBBARD, RE
    ISAACS, NW
    REYNOLDS, CD
    SAKABE, K
    SAKABE, N
    VIJAYAN, NM
    [J]. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES, 1988, 319 (1195) : 369 - &
  • [3] THE TREATMENT OF ERRORS IN THE ISOMORPHOUS REPLACEMENT METHOD
    BLOW, DM
    CRICK, FHC
    [J]. ACTA CRYSTALLOGRAPHICA, 1959, 12 (10): : 794 - 802
  • [4] BETWEEN OBJECTIVITY AND SUBJECTIVITY
    BRANDEN, CI
    JONES, TA
    [J]. NATURE, 1990, 343 (6260) : 687 - 689
  • [5] A BAYESIAN STATISTICAL-THEORY OF THE PHASE PROBLEM .1. A MULTICHANNEL MAXIMUM-ENTROPY FORMALISM FOR CONSTRUCTING GENERALIZED JOINT PROBABILITY-DISTRIBUTIONS OF STRUCTURE FACTORS
    BRICOGNE, G
    [J]. ACTA CRYSTALLOGRAPHICA SECTION A, 1988, 44 : 517 - 545
  • [6] GEOMETRIC SOURCES OF REDUNDANCY IN INTENSITY DATA AND THEIR USE FOR PHASE DETERMINATION
    BRICOGNE, G
    [J]. ACTA CRYSTALLOGRAPHICA SECTION A, 1974, A 30 (MAY1): : 395 - 405
  • [7] METHODS AND PROGRAMS FOR DIRECT-SPACE EXPLOITATION OF GEOMETRIC REDUNDANCIES
    BRICOGNE, G
    [J]. ACTA CRYSTALLOGRAPHICA SECTION A, 1976, 32 (SEP1): : 832 - 847
  • [8] MAXIMUM-ENTROPY AND THE FOUNDATIONS OF DIRECT METHODS
    BRICOGNE, G
    [J]. ACTA CRYSTALLOGRAPHICA SECTION A, 1984, 40 (JUL): : 410 - 445
  • [9] ABINITIO PHASE DETERMINATION FOR SPHERICAL VIRUSES - PARAMETER DETERMINATION FOR SPHERICAL-SHELL MODELS
    CHAPMAN, MS
    TSAO, J
    ROSSMANN, MG
    [J]. ACTA CRYSTALLOGRAPHICA SECTION A, 1992, 48 : 301 - 312
  • [10] A RELATION BETWEEN THE SIGNS OF STRUCTURE FACTORS
    COCHRAN, W
    [J]. ACTA CRYSTALLOGRAPHICA, 1952, 5 (01): : 65 - 67