EXPLORING DNA MINOR-GROOVE INTERACTIONS THROUGH A PROBE CONJUGATE IN MAJOR GROOVE - FLUORESCENCE STUDIES ON NETROSIN COMPLEXATION WITH DU-5-AMINODANSYL-DNA

被引:8
作者
BARAWKAR, DA [1 ]
GANESH, KN [1 ]
机构
[1] NATL CHEM LAB,DIV ORGAN CHEM,POONA 411008,MAHARASHTRA,INDIA
关键词
D O I
10.1006/bbrc.1994.2147
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The binding of netropsin to 5-Aminodansyl-dU-DNA (2-5) in minor groove is shown to correlate with fluorescence changes of dansyl fluorophore located in major groove. This enables a study of a minor groove binding event through crosstalk with conjugated probe in major groove. The dielectric constant of major groove estimated from fluorescence properties of (2-6) is about 55D in contrast to the literature reported minor groove dielectric constant of 20D in the poly[d(AT)]-poly[d(AT)] duplex. (C) 1994 Academic Press, Inc.
引用
收藏
页码:53 / 58
页数:6
相关论文
共 18 条
  • [1] EFFECT OF C5-AMINO SUBSTITUENT ON 2'-DEOXYURIDINE BASE-PAIRING WITH 2'-DEOXYADENOSINE - INVESTIGATION BY H-1 AND C-13 NMR-SPECTROSCOPY
    BARAWKAR, DA
    KUMAR, RK
    GANESH, KN
    [J]. TETRAHEDRON, 1992, 48 (39) : 8505 - 8514
  • [2] SOLID-PHASE SYNTHESIS OF DNA CONTAINING 5-NH2-2'-DEOXYURIDINE
    BARAWKAR, DA
    GANESH, KN
    [J]. BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 1993, 3 (02) : 347 - 352
  • [3] BRESLAUER KJ, 1987, P NATL ACAD SCI USA, V84, P4359
  • [4] BRESLAUER KJ, 1988, P NATL ACAD SCI USA, V85, P8939
  • [6] BINDING OF AN ANTITUMOR DRUG TO DNA NETROPSIN AND C-G-C-G-A-A-T-T-BRC-G-C-G
    KOPKA, ML
    YOON, C
    GOODSELL, D
    PJURA, P
    DICKERSON, RE
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1985, 183 (04) : 553 - 563
  • [7] THE MOLECULAR-ORIGIN OF DNA DRUG SPECIFICITY IN NETROPSIN AND DISTAMYCIN
    KOPKA, ML
    YOON, C
    GOODSELL, D
    PJURA, P
    DICKERSON, RE
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1985, 82 (05) : 1376 - 1380
  • [8] Lakowicz J. R., 1983, PRINCIPLES FLUORESCE, P187, DOI 10.1007/978-1-4615-7658-7_7
  • [9] NEIDLE S, 1987, BIOCHEM J, V243, P1
  • [10] ANTIBIOTIC-DNA INTERACTIONS - INTERMOLECULAR NUCLEAR OVERHAUSER EFFECTS IN THE NETROPSIN-D (C-G-C-G-A-A-T-T-C-G-C-G) COMPLEX IN SOLUTION
    PATEL, DJ
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1982, 79 (21): : 6424 - 6428