A NEW FAMILY OF CARBON-NITROGEN HYDROLASES

被引:100
作者
BORK, P
KOONIN, EV
机构
[1] MAX DELBRUCK CTR MOLEC MED,D-13125 BERLIN,GERMANY
[2] NATL LIB MED,NATL CTR BIOTECHNOL INFORMAT,BETHESDA,MD 20894
关键词
ENZYME EVOLUTION; HOMOLOGY SEARCH; NITROGEN METABOLISM;
D O I
10.1002/pro.5560030821
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Using computer methods for database search and multiple alignment, statistically significant sequence similarities were identified between several nitrilases with distinct substrate specificity, cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. All these proteins appear to be involved in the reduction of organic nitrogen compounds and ammonia production. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. The new family of enzymes is characterized by several conserved motifs, one of which contains an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis.
引用
收藏
页码:1344 / 1346
页数:3
相关论文
共 18 条
[1]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[2]   THE SWISS-PROT PROTEIN-SEQUENCE DATA-BANK, RECENT DEVELOPMENTS [J].
BAIROCH, A ;
BOECKMANN, B .
NUCLEIC ACIDS RESEARCH, 1993, 21 (13) :3093-3096
[3]   FROM GENOME SEQUENCES TO PROTEIN FUNCTION [J].
BORK, P ;
OUZOUNIS, C ;
SANDER, C .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1994, 4 (03) :393-403
[4]   PURIFICATION AND PROPERTIES OF CYANIDE HYDRATASE FROM FUSARIUM-LATERITIUM AND ANALYSIS OF THE CORRESPONDING CHY1 GENE [J].
CLUNESS, MJ ;
TURNER, PD ;
CLEMENTS, E ;
BROWN, DT ;
OREILLY, C .
JOURNAL OF GENERAL MICROBIOLOGY, 1993, 139 :1807-1815
[5]   IDENTIFICATION OF PROTEIN CODING REGIONS BY DATABASE SIMILARITY SEARCH [J].
GISH, W ;
STATES, DJ .
NATURE GENETICS, 1993, 3 (03) :266-272
[6]  
HIGGINS DG, 1992, COMPUT APPL BIOSCI, V8, P189
[7]   NITRILASE IN BIOSYNTHESIS OF THE PLANT HORMONE INDOLE-3-ACETIC-ACID FROM INDOLE-3-ACETONITRILE - CLONING OF THE ALCALIGENES GENE AND SITE-DIRECTED MUTAGENESIS OF CYSTEINE RESIDUES [J].
KOBAYASHI, M ;
IZUI, H ;
NAGASAWA, T ;
YAMADA, H .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (01) :247-251
[8]   PRIMARY STRUCTURE OF AN ALIPHATIC NITRILE-DEGRADING ENZYME, ALIPHATIC NITRILASE, FROM RHODOCOCCUS-RHODOCHROUS K22 AND EXPRESSION OF ITS GENE AND IDENTIFICATION OF ITS ACTIVE-SITE RESIDUE [J].
KOBAYASHI, M ;
YANAKA, N ;
NAGASAWA, T ;
YAMADA, H .
BIOCHEMISTRY, 1992, 31 (37) :9000-9007
[9]   YEAST CHROMOSOME-III - NEW GENE FUNCTIONS [J].
KOONIN, EV ;
BORK, P ;
SANDER, C .
EMBO JOURNAL, 1994, 13 (03) :493-503
[10]  
KVALNESKRICK KL, 1993, J BIOL CHEM, V268, P5686