A COMPREHENSIVE CLASSIFICATION OF NUCLEIC-ACID STRUCTURAL FAMILIES BASED ON STRAND DIRECTION AND BASE-PAIRING

被引:25
作者
LAVERY, R
ZAKRZEWSKA, K
SUN, JS
HARVEY, SC
机构
[1] MUSEUM NAT HIST, BIOPHYS LAB, F-75005 PARIS, FRANCE
[2] UNIV ALABAMA, DEPT BIOCHEM, BIRMINGHAM, AL 35294 USA
关键词
D O I
10.1093/nar/20.19.5011
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We propose a classification of DNA structures formed from 1 to 4 strands, based only on relative strand directions, base to strand orientation and base pairing geometries. This classification and its associated notation enable all nucleic acids to be grouped into structural families and bring to light possible structures which have not yet been observed experimentally. It also helps in understanding transitions between families and can assist in the design of multistrand structures.
引用
收藏
页码:5011 / 5016
页数:6
相关论文
共 26 条
[1]   STRUCTURES FOR POLYNUCLEOTIDE COMPLEXES POLY(DA).POLY(DT) AND POLY(DT).POLY(DA).POLY(DT) [J].
ARNOTT, S ;
SELSING, E .
JOURNAL OF MOLECULAR BIOLOGY, 1974, 88 (02) :509-+
[2]   STRUCTURE OF SINGLE-STRANDED POLYRIBONUCLEOTIDE POLYCYTIDYLIC ACID [J].
ARNOTT, S ;
CHANDRASEKARAN, R ;
LESLIE, AGW .
JOURNAL OF MOLECULAR BIOLOGY, 1976, 106 (03) :735-748
[3]   PARALLEL DOUBLE-STRANDED HELICES AND THE TERTIARY STRUCTURE OF NUCLEIC-ACIDS [J].
BORISOVA, OF ;
GOLOVA, YB ;
GOTTIKH, BP ;
ZIBROV, AS ;
ILICHEVA, IA ;
LYSOV, YP ;
MAMAYEVA, OK ;
CHERNOV, BK ;
CHERNYI, AA ;
SHCHYOLKINA, AK ;
FLORENTIEV, VL .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 1991, 8 (06) :1187-1210
[4]   POLYNUCLEOTIDES .16. FORMATION OF THE TRIPLE-STRANDED POLYNUCLEOTIDE HELIX, POLY(A-A-U) [J].
BROITMAN, SL ;
IM, DD ;
FRESCO, JR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1987, 84 (15) :5120-5124
[5]   POLYNUCLEOTIDES .47. SYNTHESIS AND PROPERTIES OF POLY(2-METHYLTHIOADENYLIC 2-ETHYLTHIOADENYLIC ACID) - FORMATION OF NON-WATSON-CRICK TYPE COMPLEXES [J].
FUKUI, T ;
IKEHARA, M .
BIOCHIMICA ET BIOPHYSICA ACTA, 1979, 562 (03) :527-533
[6]   INTRAMOLECULAR DNA TRIPLEXES IN SUPERCOILED PLASMIDS [J].
HANVEY, JC ;
SHIMIZU, M ;
WELLS, RD .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (17) :6292-6296
[8]   SPECIFIC REGULATION OF GENE-EXPRESSION BY ANTISENSE, SENSE AND ANTIGENE NUCLEIC-ACIDS [J].
HELENE, C ;
TOULME, JJ .
BIOCHIMICA ET BIOPHYSICA ACTA, 1990, 1049 (02) :99-125
[9]   TOPOLOGY AND FORMATION OF TRIPLE-STRANDED H-DNA [J].
HTUN, H ;
DAHLBERG, JE .
SCIENCE, 1989, 243 (4898) :1571-1576
[10]   GENERAL STRUCTURE OF TRANSFER-RNA MOLECULES [J].
KIM, SH ;
SUSSMAN, JL ;
SUDDATH, FL ;
QUIGLEY, GJ ;
MCPHERSON, A ;
WANG, AHJ ;
SEEMAN, NC ;
RICH, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1974, 71 (12) :4970-4974