A COMBINED QUANTUM-MECHANICAL AND MOLECULAR MECHANICAL POTENTIAL FOR MOLECULAR-DYNAMICS SIMULATIONS

被引:2162
作者
FIELD, MJ
BASH, PA
KARPLUS, M
机构
[1] Department of Chemistry, Harvard University, Cambridge, Massachusetts, 02138
关键词
D O I
10.1002/jcc.540110605
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
A combined quantum mechanical (QM) and molecular mechanical (MM) potential has been developed for the study of reactions in condensed phases. For the quantum mechanical calculations semiempirical methods of the MNDO and AM1 type are used, while the molecular mechanics part is treated with the CHARMM force field. Specific prescriptions are given for the interactions between the QM and MM portions of the system; cases in which the QM and MM methodology is applied to parts of the same molecule or to different molecules are considered. The details of the method and a range of test calculations, including comparisons with ab initio and experimental results, are given. It is found that in many cases satisfactory results are obtained. However, there are limitations to this type of approach, some of which arise from the AM1 or MNDO methods themselves and others from the present QM/MM implementation. This suggests that it is important to test the applicability of the method to each particular case prior to its use. Possible areas of improvement in the methodology are discussed. Copyright © 1990 John Wiley & Sons, Inc.
引用
收藏
页码:700 / 733
页数:34
相关论文
共 126 条
  • [1] COMPUTER-SIMULATION OF POLAR LIQUIDS
    ADAMS, DJ
    ADAMS, EM
    HILLS, GJ
    [J]. MOLECULAR PHYSICS, 1979, 38 (02) : 387 - 400
  • [2] QUANTUM-MECHANICAL AND MOLECULAR MECHANICAL STUDIES ON A MODEL FOR THE DIHYDROXYACETONE PHOSPHATE GLYCERALDEHYDE PHOSPHATE ISOMERIZATION CATALYZED BY TRIOSEPHOSPHATE ISOMERASE (TIM)
    ALAGONA, G
    DESMEULES, P
    GHIO, C
    KOLLMAN, PA
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1984, 106 (12) : 3623 - 3632
  • [3] ON THE 3-DIMENSIONAL STRUCTURE AND CATALYTIC MECHANISM OF TRIOSE PHOSPHATE ISOMERASE
    ALBER, T
    BANNER, DW
    BLOOMER, AC
    PETSKO, GA
    PHILLIPS, D
    RIVERS, PS
    WILSON, IA
    [J]. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES, 1981, 293 (1063) : 159 - 171
  • [4] Allen L C, 1981, Ann N Y Acad Sci, V367, P383, DOI 10.1111/j.1749-6632.1981.tb50580.x
  • [5] CALCULATION OF STRUCTURES OF HYDROCARBONS CONTAINING DELOCALIZED ELECTRONIC SYSTEMS BY MOLECULAR MECHANICS METHOD
    ALLINGER, NL
    SPRAGUE, JT
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1973, 95 (12) : 3893 - 3907
  • [6] THE ROLE OF LONG RANGED FORCES IN DETERMINING THE STRUCTURE AND PROPERTIES OF LIQUID WATER
    ANDREA, TA
    SWOPE, WC
    ANDERSEN, HC
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1983, 79 (09) : 4576 - 4584
  • [7] [Anonymous], 1970, APPROXIMATE MOL ORBI
  • [8] [Anonymous], 1971, JANAF THERMOCHEMICAL
  • [9] [Anonymous], 1987, DYNAMICS PROTEINS NU
  • [10] [Anonymous], 1986, AB INITIO MOL ORBITA