GENOMIC MAPPING OF INTRACISTERNAL A-PARTICLE PROVIRAL ELEMENTS

被引:37
作者
LUEDERS, KK
FRANKEL, WN
MIETZ, JA
KUFF, EL
机构
[1] NCI,TUMOR VIRUS BIOL LAB,BETHESDA,MD 20892
[2] JACKSON LAB,BAR HARBOR,ME 04609
关键词
D O I
10.1007/BF00290429
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Intracisternal A-particle (IAP) proviral elements are moderately reiterated and widely dispersed in the mouse genome. Oligonucleotide probes have been derived from three distinctive IAP element subfamilies (LS elements) that are transcriptionally active in normal mouse B- and T-cells. In HindIII digests, LS element-specific oligonucleotides each react with a limited number of restriction fragments that represent junctions between proviral and flanking DNA. These fragments have characteristic strain distribution patterns (SDPs) which are polymorphic in the DNAs of different mouse strains. We have established chromosomal assignments for 44 LS proviral loci by comparing their SDPs with those of known genetic markers in the BXD set of RI mouse strains. Some of the loci have also been scored in the CXB RI set. The IAP LS loci can provide a significant number of markers with a recognized genetic organization to the mouse genome map.
引用
收藏
页码:69 / 77
页数:9
相关论文
共 46 条
[1]   CHROMOSOMAL LOCATIONS OF GENES ENCODING 2',3' CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE AND GLIAL FIBRILLARY ACIDIC PROTEIN IN THE MOUSE [J].
BERNIER, L ;
COLMAN, DR ;
DEUSTACHIO, P .
JOURNAL OF NEUROSCIENCE RESEARCH, 1988, 20 (04) :497-504
[2]   MAPPING AND GENE ORDER OF U1 SMALL NUCLEAR-RNA, ENDOGENOUS VIRAL ENV SEQUENCE, AMYLASE, AND ALCOHOL DEHYDROGENASE-3 ON MOUSE CHROMOSOME-3 [J].
BLATT, C ;
SAXE, D ;
MARZLUFF, WF ;
LOBO, S ;
NESBITT, MN ;
SIMON, MI .
SOMATIC CELL AND MOLECULAR GENETICS, 1988, 14 (02) :133-142
[3]   IDENTIFICATION OF THE HEPATOCYTE GROWTH-FACTOR RECEPTOR AS THE C-MET PROTOONCOGENE PRODUCT [J].
BOTTARO, DP ;
RUBIN, JS ;
FALETTO, DL ;
CHAN, AML ;
KMIECIK, TE ;
VANDEWOUDE, GF ;
AARONSON, SA .
SCIENCE, 1991, 251 (4995) :802-804
[4]   DIRECT MOLECULAR-IDENTIFICATION OF THE MOUSE PINK-EYED UNSTABLE MUTATION BY GENOME SCANNING [J].
BRILLIANT, MH ;
GONDO, Y ;
EICHER, EM .
SCIENCE, 1991, 252 (5005) :566-569
[5]  
CAMPBELL GR, 1989, ONCOGENE RES, V4, P47
[6]   IMPROVED HYBRIDIZATION ASSAYS EMPLOYING TAILED OLIGONUCLEOTIDE PROBES - A DIRECT COMPARISON WITH 5'-END-LABELED OLIGONUCLEOTIDE PROBES AND NICK-TRANSLATED PLASMID PROBES [J].
COLLINS, ML ;
HUNSAKER, WR .
ANALYTICAL BIOCHEMISTRY, 1985, 151 (02) :211-224
[7]   THE GENERATION OF A LIBRARY OF PCR-ANALYZED MICROSATELLITE VARIANTS FOR GENETIC-MAPPING OF THE MOUSE GENOME [J].
CORNALL, RJ ;
AITMAN, TJ ;
HEARNE, CM ;
TODD, JA .
GENOMICS, 1991, 10 (04) :874-881
[8]  
DEAN M, 1987, Genomics, V1, P167, DOI 10.1016/0888-7543(87)90009-7
[9]   SOUTHERN ANALYSIS OF GENOMIC DNA WITH UNIQUE AND DEGENERATE OLIGONUCLEOTIDE PROBES - A METHOD FOR REDUCING PROBE DEGENERACY [J].
DEVLIN, PE ;
RAMACHANDRAN, KL ;
CATE, RL .
DNA-A JOURNAL OF MOLECULAR & CELLULAR BIOLOGY, 1988, 7 (07) :499-507
[10]  
DIETRICH W, 1992, GENETICS, V131, P423