COMPLETE NUCLEOTIDE-SEQUENCE OF THE GROUP-I RNA BACTERIOPHAGE FR

被引:23
作者
ADHIN, MR
AVOTS, A
BERZIN, V
OVERBEEK, GP
VANDUIN, J
机构
[1] LEIDEN STATE UNIV,GORLAEUS LABS,DEPT BIOCHEM,POB 9502,2300 RA LEIDEN,NETHERLANDS
[2] ACAD SCI LASSR,INST ORGAN SYNTH,RIGA 226006,LATVIA,USSR
关键词
RNA phage; Sequence comparison;
D O I
10.1016/0167-4781(90)90149-V
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We report the complete nucleotide sequence of the group I RNA bacteriophage fr. The entire genome consists of 3575 nucleotides, six nucleotides more than the only other sequenced group I representative, MS2. The greatest divergence between these phages occurs in the 5′ terminal region of the A gene, while the lysis-replicase gene overlap, the coat gene and the central region of the replicase gene are highly conserved. Overall sequence homology between fr and MS2 is 77%. Here, we present a general comparison between the two phages. In the accompanying paper we use phylogenetic sequence comparison between MS2 and fr to deduce the secondary structure at the 3′ untranslated region. © 1990.
引用
收藏
页码:104 / 109
页数:6
相关论文
共 24 条
  • [1] TRANSLATIONAL REGULATION OF THE LYSIS GENE IN RNA BACTERIOPHAGE FR REQUIRES A UUG INITIATION CODON
    ADHIN, MR
    VANDUIN, J
    [J]. MOLECULAR & GENERAL GENETICS, 1989, 218 (01): : 137 - 142
  • [2] THE AMINO TERMINAL HALF OF THE MS2-CODED LYSIS PROTEIN IS DISPENSABLE FOR FUNCTION - IMPLICATIONS FOR OUR UNDERSTANDING OF CODING REGION OVERLAPS
    BERKHOUT, B
    DESMIT, MH
    SPANJAARD, RA
    BLOM, T
    VANDUIN, J
    [J]. EMBO JOURNAL, 1985, 4 (12) : 3315 - 3320
  • [3] NUCLEOTIDE SEQUENCE AT BINDING-SITE FOR COAT PROTEIN ON RNA OF BACTERIOPHAGE-R17
    BERNARDI, A
    SPAHR, PF
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1972, 69 (10) : 3033 - +
  • [4] SEQUENCE OF THE GENES-CODING FOR THE A-PROTEIN AND COAT PROTEIN OF BACTERIOPHAGE-FR
    BERZIN, V
    AVOTS, A
    JANSONE, I
    GINTNERE, L
    TSIMANIS, A
    [J]. NUCLEIC ACIDS RESEARCH, 1987, 15 (16) : 6741 - 6741
  • [5] BIRNBOIM HC, 1979, NUCLEIC ACIDS RES, V7, P1513
  • [6] BACTERIOPHAGE QBETA REPLICASE CONTAINS PROTEIN-BIOSYNTHESIS ELONGATION FACTORS EF TU AND EF TS
    BLUMENTHAL, T
    WEBER, K
    LANDERS, TA
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1972, 69 (05) : 1313 - +
  • [7] COMPLETE NUCLEOTIDE-SEQUENCE OF BACTERIOPHAGE MS2-RNA - PRIMARY AND SECONDARY STRUCTURE OF REPLICASE GENE
    FIERS, W
    CONTRERAS, R
    DUERINCK, F
    HAEGEMAN, G
    ISERENTANT, D
    MERREGAERT, J
    MINJOU, W
    MOLEMANS, F
    RAEYMAEKERS, A
    VANDENBERGHE, A
    VOLCKAERT, G
    YSEBAERT, M
    [J]. NATURE, 1976, 260 (5551) : 500 - 507
  • [8] DISTRIBUTION OF RIBONUCLEIC-ACID COLIPHAGES IN SOUTH AND EAST-ASIA
    FURUSE, K
    SAKURAI, T
    HIRASHIMA, A
    KATSUKI, M
    ANDO, A
    WATANABE, I
    [J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1978, 35 (06) : 995 - 1002
  • [9] ANALYSIS OF THE COMPLETE NUCLEOTIDE-SEQUENCE OF THE GROUP IV RNA COLIPHAGE SP
    INOKUCHI, Y
    JACOBSON, AB
    HIROSE, T
    INAYAMA, S
    HIRASHIMA, A
    [J]. NUCLEIC ACIDS RESEARCH, 1988, 16 (13) : 6205 - 6221
  • [10] INOKUCHI Y, 1986, J BIOCHEM-TOKYO, V99, P1169, DOI 10.1093/oxfordjournals.jbchem.a135580