BACTERIAL GENOMICS

被引:130
作者
COLE, ST [1 ]
SAINTGIRONS, I [1 ]
机构
[1] INST PASTEUR, UNITE BACTERIOL MOLEC & MED, F-75724 PARIS, FRANCE
关键词
GENOME ORGANIZATION; PULSED-FIELD GEL ELECTROPHORESIS; ORDERED LIBRARIES; CHROMOSOME EVOLUTION; BACTERIAL CHROMOSOMES;
D O I
10.1016/0168-6445(94)90003-5
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
During the last decade, great advances have been made in the study of bacterial genomes which is perhaps better described by the term bacterial genomics. The application of powerful techniques, such as pulsed-field gel electrophoresis of macro-restriction fragments of genomic DNA, has freed the characterisation of the chromosomes of many bacteria from the constraints imposed by classical genetic analysis. It is now possible to analyse the genome of virtually every microorganism by direct molecular methods and to construct detailed physical and gene maps. In this review, the various practical approaches are compared and contrasted, and some of the emerging themes of bacterial genomics, such as the size, shape, number and organisation of chromosomes are discussed.
引用
收藏
页码:139 / 160
页数:22
相关论文
共 165 条
[1]   COMPLEMENTARY-DNA SEQUENCING - EXPRESSED SEQUENCE TAGS AND HUMAN GENOME PROJECT [J].
ADAMS, MD ;
KELLEY, JM ;
GOCAYNE, JD ;
DUBNICK, M ;
POLYMEROPOULOS, MH ;
XIAO, H ;
MERRIL, CR ;
WU, A ;
OLDE, B ;
MORENO, RF ;
KERLAVAGE, AR ;
MCCOMBIE, WR ;
VENTER, JC .
SCIENCE, 1991, 252 (5013) :1651-1656
[2]   PHYSICAL MAP OF THE BRUCELLA-MELITENSIS 16-M CHROMOSOME [J].
ALLARDETSERVENT, A ;
CARLESNURIT, MJ ;
BOURG, G ;
MICHAUX, S ;
RAMUZ, M .
JOURNAL OF BACTERIOLOGY, 1991, 173 (07) :2219-2224
[3]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[4]   AN SFII RESTRICTION MAP OF THE BACILLUS-SUBTILIS 168 GENOME [J].
AMJAD, M ;
CASTRO, JM ;
SANDOVAL, H ;
WU, JJ ;
YANG, M ;
HENNER, DJ ;
PIGGOT, PJ .
GENE, 1991, 101 (01) :15-21
[5]  
Anagnostopoulos C., 1993, P425
[6]   STUDIES ON THE CHEMICAL NATURE OF THE SUBSTANCE INDUCING TRANSFORMATION OF PNEUMOCOCCAL TYPES INDUCTION OF TRANSFORMATION BY A DESOXYRIBONUCLEIC ACID FRACTION ISOLATED FROM PNEUMOCOCCUS TYPE III [J].
Avery, Oswald T. ;
MacLeod, Colin M. ;
McCarty, Maclyn .
JOURNAL OF EXPERIMENTAL MEDICINE, 1944, 79 (02) :137-158
[7]   AN ORDERED COLLECTION OF BACILLUS-SUBTILIS DNA SEGMENTS CLONED IN YEAST ARTIFICIAL CHROMOSOMES [J].
AZEVEDO, V ;
ALVAREZ, E ;
ZUMSTEIN, E ;
DAMIANI, G ;
SGARAMELLA, V ;
EHRLICH, SD ;
SERROR, P .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (13) :6047-6051
[8]   LINKAGE MAP OF ESCHERICHIA-COLI K-12, EDITION-8 [J].
BACHMANN, BJ .
MICROBIOLOGICAL REVIEWS, 1990, 54 (02) :130-197
[9]   PHYSICAL AND GENETIC MAPS OF THE GENOME OF THE HETEROCYST-FORMING CYANOBACTERIUM ANABAENA SP STRAIN PCC-7120 [J].
BANCROFT, I ;
WOLK, CP ;
OREN, EV .
JOURNAL OF BACTERIOLOGY, 1989, 171 (11) :5940-5948
[10]   LINEAR CHROMOSOME OF BORRELIA-BURGDORFERI [J].
BARIL, C ;
RICHAUD, C ;
BARANTON, G ;
STGIRONS, I .
RESEARCH IN MICROBIOLOGY, 1989, 140 (08) :507-516