THE PROTEIN FOLD OF THE VON-WILLEBRAND-FACTOR TYPE-A DOMAIN IS PREDICTED TO BE SIMILAR TO THE OPEN TWISTED BETA-SHEET FLANKED BY ALPHA-HELICES FOUND IN HUMAN RAS-P21

被引:34
作者
EDWARDS, YJK [1 ]
PERKINS, SJ [1 ]
机构
[1] ROYAL FREE HOSP,SCH MED,DEPT BIOCHEM & MOLEC BIOL,LONDON NW3 2PF,ENGLAND
基金
英国惠康基金;
关键词
VON WILLEBRAND FACTOR; DOUBLY-WOUND ALPHA/BETA FOLD; RAS-P21; SECONDARY STRUCTURE PREDICTION; PROTEIN FOLD RECOGNITION;
D O I
10.1016/0014-5793(94)01447-9
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The von Willebrand Factor type A domain is the prototype for a protein superfamily. It possesses no significant sequence similarity to any known protein structure. Secondary structure predictions indicate a largely alternating pattern of six alpha-helices and six beta-strands. A protein fold for this domain is proposed to correspond to a doubly-wound open twisted beta-sheet structure flanked by alpha-helices. Close agreement was found with the GTP-binding domain of human ras-p21, provided that an extra alpha-helix was inserted. The structure of the predicted fold showed high compatibility with the proximate location of two Mg2+-binding Asp residues, two disulphide-bridged Cys residues, and other known functional attributes of this domain.
引用
收藏
页码:283 / 286
页数:4
相关论文
共 25 条
[1]  
[Anonymous], 1999, INTRO PROTEIN STRUCT
[2]   IDENTIFICATION OF ASPARTIC ACID-514 THROUGH GLUTAMIC ACID-542 AS A GLYCOPROTEIN-IB-IX COMPLEX RECEPTOR RECOGNITION SEQUENCE IN VONWILLEBRAND-FACTOR - MECHANISM OF MODULATION OF VONWILLEBRAND-FACTOR BY RISTOCETIN AND BOTROCETIN [J].
BERNDT, MC ;
WARD, CM ;
BOOTH, WJ ;
CASTALDI, PA ;
MAZUROV, AV ;
ANDREWS, RK .
BIOCHEMISTRY, 1992, 31 (45) :11144-11151
[3]  
Chou P Y, 1978, Adv Enzymol Relat Areas Mol Biol, V47, P45
[4]  
COLOMBATTI A, 1991, BLOOD, V77, P2305
[5]  
EDWARDS YJK, 1994, GENES PROTEINS COMPU, V3
[6]   SETOR - HARDWARE-LIGHTED 3-DIMENSIONAL SOLID MODEL REPRESENTATIONS OF MACROMOLECULES [J].
EVANS, SV .
JOURNAL OF MOLECULAR GRAPHICS, 1993, 11 (02) :134-&
[7]   ANALYSIS OF ACCURACY AND IMPLICATIONS OF SIMPLE METHODS FOR PREDICTING SECONDARY STRUCTURE OF GLOBULAR PROTEINS [J].
GARNIER, J ;
OSGUTHORPE, DJ ;
ROBSON, B .
JOURNAL OF MOLECULAR BIOLOGY, 1978, 120 (01) :97-120
[8]   ALIGNMENT AND SEARCHING FOR COMMON PROTEIN FOLDS USING A DATA-BANK OF STRUCTURAL TEMPLATES [J].
JOHNSON, MS ;
OVERINGTON, JP ;
BLUNDELL, TL .
JOURNAL OF MOLECULAR BIOLOGY, 1993, 231 (03) :735-752
[9]   A NEW APPROACH TO PROTEIN FOLD RECOGNITION [J].
JONES, DT ;
TAYLOR, WR ;
THORNTON, JM .
NATURE, 1992, 358 (6381) :86-89
[10]   DICTIONARY OF PROTEIN SECONDARY STRUCTURE - PATTERN-RECOGNITION OF HYDROGEN-BONDED AND GEOMETRICAL FEATURES [J].
KABSCH, W ;
SANDER, C .
BIOPOLYMERS, 1983, 22 (12) :2577-2637