An intercompatible gene-tagging insert sequence was designed to conveniently introduce epitope-tagged polypeptides into bacteria and mammalian cells. The presence of rare restriction enzyme sites located between the ATG codon and the sequence encoding the introduced epsilon-tag creates a general cloning site which allows efficient cloning of virtually any desired cDNA fragment produced by the polymerase chain reaction (PCR). The tagging insert sequence encodes a KGF-SYFGEDLMP peptide, derived from the last 12 amino acids of the protein kinase C epsilon gene, to serve as a C-terminal epitope tag of the expressed protein. While the insert can be readily adapted for insertion into any expression vector, this paper details the introduction and characterization of the epsilon-epitope-tagging insert into the bacterial pTrcHis A (epsilon TrcHis A) vector and into the metallothionein promoter-driven eukaryotic (epsilon MTH) expression vector. The expressed epsilon-tagged proteins can be readily detected with a commercially available antibody specific for the epsilon-peptide. Immunoscreening of Escherichia coli colonies transformed with the PCR-generated cDNA inserted into the epsilon TrcHis A vector enables rapid, direct biochemical characterization of the PCR product. The biochemically characterized gene constructs from the epsilon TrcHis A plasmid can be inserted into the epsilon MTH vector by a single subcloning step using the introduced compatible cohesive ends. This epsilon-epitope-tagging insert provides investigators with a versatile, uncomplicated, and reliable method of expressing an epitope-tagged PCR product in the cell type of interest. The epsilon-epitope tagging of the expressed peptide facilitated: (1) immunoscreening of NIH 3T3 transfectants by Western blot analysis for the introduced polypeptide, (2) immunoprecipitation of the overexpressed gene products following metabolic labeling with [S-35]methionine and [P-32]orthophosphate, and (3) subcellular localization of different recombinant proteins by immunocytochemistry. (C) 1994 Academic Press,Inc.