Complete Genome Sequence of Methanoregula formicica SMSPT, a Mesophilic Hydrogenotrophic Methanogen Isolated from a Methanogenic Upflow Anaerobic Sludge Blanket Reactor

被引:11
作者
Yamamoto, Kyosuke [1 ]
Tamaki, Hideyuki [1 ,2 ]
Cadillo-Quiroz, Hinsby [3 ,4 ]
Imachi, Hiroyuki [5 ]
Kyrpides, Nikos [6 ,7 ]
Woyke, Tanja [6 ]
Goodwin, Lynne [6 ]
Zinder, Stephen H. [8 ]
Kamagata, Yoichi [1 ]
Liu, Wen-Tso [2 ]
机构
[1] Natl Inst Adv Ind Sci & Technol, Bioprod Res Inst, Ibaraki, Japan
[2] Univ Illinois, Dept Civil & Environm Engn, Urbana, IL USA
[3] Arizona State Univ, Sch Life Sci, Tempe, AZ USA
[4] Arizona State Univ, Biodesign Inst, Swette Ctr Environm Biotechnol, Tempe, AZ USA
[5] Japan Agcy Marine Earth Sci & Technol JAMSTEC, Dept Subsurface Geobiol Anal & Res D SUGAR, Yokosuka, Kanagawa, Japan
[6] DOE Joint Genome Inst, Walnut Creek, CA USA
[7] King Abdulaziz Univ, Fac Sci, Dept Biol Sci, Jeddah, Saudi Arabia
[8] Cornell Univ, Dept Microbiol, Ithaca, NY USA
关键词
D O I
10.1128/genomeA.00870-14
中图分类号
学科分类号
摘要
Methanoregula formicica SMSPT is a mesophilic H-2/formate-utilizing methanogenic archaeon and a representative of the family Methanoregulaceae, a recently proposed novel family within the order Methanomicrobiales. Here, we report a 2.8-Mb complete genome sequence of this methanogenic archaeon.
引用
收藏
页数:2
相关论文
共 12 条
[1]   Methanoregula boonei gen. nov., sp. nov., an acidiphilic methanogen isolated from an acidic peat bog [J].
Braeuer, Suzanna L. ;
Cadillo-Quiroz, Hinsby ;
Ward, Rebekah J. ;
Yavitt, Joseph B. ;
Zinder, Stephen H. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2011, 61 :45-52
[2]   Methanosphaerula palustris gen. nov., sp nov., a hydrogenotrophic methanogen isolated from a minerotrophic fen peatland [J].
Cadillo-Quiroz, Hinsby ;
Yavitt, Joseph B. ;
Zinder, Stephen H. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2009, 59 :928-935
[3]   High-quality draft assemblies of mammalian genomes from massively parallel sequence data [J].
Gnerre, Sante ;
MacCallum, Iain ;
Przybylski, Dariusz ;
Ribeiro, Filipe J. ;
Burton, Joshua N. ;
Walker, Bruce J. ;
Sharpe, Ted ;
Hall, Giles ;
Shea, Terrance P. ;
Sykes, Sean ;
Berlin, Aaron M. ;
Aird, Daniel ;
Costello, Maura ;
Daza, Riza ;
Williams, Louise ;
Nicol, Robert ;
Gnirke, Andreas ;
Nusbaum, Chad ;
Lander, Eric S. ;
Jaffe, David B. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (04) :1513-1518
[4]   Prodigal: prokaryotic gene recognition and translation initiation site identification [J].
Hyatt, Doug ;
Chen, Gwo-Liang ;
LoCascio, Philip F. ;
Land, Miriam L. ;
Larimer, Frank W. ;
Hauser, Loren J. .
BMC BIOINFORMATICS, 2010, 11
[5]   Methanolinea tarda gen. nov., sp nov., a methane-producing archaeon isolated from a methanogenic digester sludge [J].
Imachi, Hiroyuki ;
Sakai, Sanae ;
Sekiguchi, Yuji ;
Hanada, Satoshi ;
Kamagata, Yoichi ;
Ohashi, Akiyoshi ;
Harada, Hideki .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2008, 58 :294-301
[6]   IMG ER: a system for microbial genome annotation expert review and curation [J].
Markowitz, Victor M. ;
Mavromatis, Konstantinos ;
Ivanova, Natalia N. ;
Chen, I-Min A. ;
Chu, Ken ;
Kyrpides, Nikos C. .
BIOINFORMATICS, 2009, 25 (17) :2271-2278
[7]   The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes [J].
Mavromatis, Konstantinos ;
Ivanova, Natalia N. ;
Chen, I-Min A. ;
Szeto, Ernest ;
Markowitz, Victor M. ;
Kyrpides, Nikos C. .
STANDARDS IN GENOMIC SCIENCES, 2009, 1 (01) :63-67
[8]  
Pati A, 2010, NAT METHODS, V7, P455, DOI [10.1038/NMETH.1457, 10.1038/nmeth.1457]
[9]   Methanolinea mesophila sp nov., a hydrogenotrophic methanogen isolated from rice field soil, and proposal of the archaeal family Methanoregulaceae fam. nov within the order Methanomicrobiales [J].
Sakai, Sanae ;
Ehara, Masayuki ;
Tseng, I-Cheng ;
Yamaguchi, Takashi ;
Braeuer, Suzanna L. ;
Cadillo-Quiroz, Hinsby ;
Zinder, Stephen H. ;
Imachi, Hiroyuki .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2012, 62 :1389-1395
[10]   The COG database: new developments in phylogenetic classification of proteins from complete genomes [J].
Tatusov, RL ;
Natale, DA ;
Garkavtsev, IV ;
Tatusova, TA ;
Shankavaram, UT ;
Rao, BS ;
Kiryutin, B ;
Galperin, MY ;
Fedorova, ND ;
Koonin, EV .
NUCLEIC ACIDS RESEARCH, 2001, 29 (01) :22-28