ABINITIO SELF-CONSISTENT FIELD AND POTENTIAL-DEPENDENT PARTIAL EQUALIZATION OF ORBITAL ELECTRONEGATIVITY CALCULATIONS OF HYDRATION PROPERTIES OF N-ACETYL-N'-METHYL-ALANINEAMIDE

被引:49
作者
GRANT, JA [1 ]
WILLIAMS, RL [1 ]
SCHERAGA, HA [1 ]
机构
[1] CORNELL UNIV,BAKER LAB CHEM,ITHACA,NY 14853
关键词
D O I
10.1002/bip.360300908
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Using a recently developed parallel computation algorithm, ab initio self-consistent field (SCF) calculations were carried out to estimate the relative hydration energies for 12 low-energy conformations of N-acetyl-N'-methyl-alanineamide. The requisite SCF calculations were carried out using 6-31G and 6-31G* basis sets, both in the absence and presence of a perturbing potential arising from a model solvent. The alpha-R, alpha-L, polyproline II (P(II)), and pi-helical conformations were preferentially stabilized by the solvent potential, whereas conformations with intramolecular hydrogen-binding C5 and C7 were preferred in the gas phase. Average vicinal nmr coupling constants (J(NH)-C-alpha-H), calculated using the total energies of the various solvated conformations, were consistent with observed coupling constants for this peptide in aqueous solution. Substantial alteration of the solute charge density occurred upon equilibration with the reaction field, as was exemplified in changes both in the molecular dipole moments and in atom-centered multipoles, when the molecule was transferred from a medium of low dielectric constant to one of high dielectric constant. In order to model these changes in charge density with an empirical scheme, we have implemented a novel monopolar representation of the solute charge density based on a potential-dependent form of partial equalization of orbital electronegativities (PDPEOE). In the atom-centered point charge PDPEOE representation, charge flows from one region of the solute to another in response to external fields. Hydration energies calculated using the PDPEOE representation are similar to those calculated by the SCF procedure. Also, the PDPEOE calculations yielded changes in molecular dipole moments upon solvation that agree closely with the changes in the calculated ab initio SCF dipole moments.
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收藏
页码:929 / 949
页数:21
相关论文
共 72 条
[1]  
Aguilar M. A., 1988, J MOL STRUC-THEOCHEM, V166, P313
[2]   SOLUTE-SOLVENT INTERACTIONS - A SIMPLE PROCEDURE FOR CONSTRUCTING THE SOLVENT CAVITY FOR RETAINING A MOLECULAR SOLUTE [J].
AGUILAR, MA ;
DELVALLE, FJO .
CHEMICAL PHYSICS, 1989, 129 (03) :439-450
[3]  
AMOS RD, 1986, CADPAC CAMBRIDGE ANA
[4]   MICROFOLDING - CONFORMATIONAL PROBABILITY MAP FOR THE ALANINE DIPEPTIDE IN WATER FROM MOLECULAR-DYNAMICS SIMULATIONS [J].
ANDERSON, AG ;
HERMANS, J .
PROTEINS-STRUCTURE FUNCTION AND GENETICS, 1988, 3 (04) :262-265
[5]   ATOM DIPOLE INTERACTION-MODEL FOR MOLECULAR OPTICAL-PROPERTIES [J].
APPLEQUIST, J .
ACCOUNTS OF CHEMICAL RESEARCH, 1977, 10 (03) :79-85
[6]   ATOM DIPOLE INTERACTION MODEL FOR MOLECULAR POLARIZABILITY - APPLICATION TO POLYATOMIC-MOLECULES AND DETERMINATION OF ATOM POLARIZABILITIES [J].
APPLEQUIST, J ;
CARL, JR ;
FUNG, KK .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1972, 94 (09) :2952-+
[7]   CONFORMATIONAL-ANALYSIS OF DIPEPTIDES IN AQUEOUS-SOLUTION .2. MOLECULAR-STRUCTURE OF GLYCINE AND ALANINE DIPEPTIDES BY DEPOLARIZED RAYLEIGH-SCATTERING AND LASER RAMAN SPECTROSCOPY [J].
AVIGNON, M ;
GARRIGOU.C ;
BOTHOREL, P .
BIOPOLYMERS, 1973, 12 (07) :1651-1669
[8]   ABINITIO EVALUATION OF ABSORPTION AND EMISSION TRANSITIONS FOR MOLECULAR SOLUTES, INCLUDING SEPARATE CONSIDERATION OF ORIENTATIONAL AND INDUCTIVE SOLVENT EFFECTS [J].
BONACCORSI, R ;
CIMIRAGLIA, R ;
TOMASI, J .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1983, 4 (04) :567-577
[9]   ON THE FREE-ENERGY CHANGES OF A SOLUTION IN LIGHT-ABSORPTION OR EMISSION PROCESSES [J].
BONACCORSI, R ;
CIMIRAGLIA, R ;
TOMASI, J .
CHEMICAL PHYSICS LETTERS, 1983, 99 (01) :77-82
[10]  
BONACCORSI R, 1981, CURRENT ASPECTS QUAN, P407