CROSREL - FULL RELAXATION MATRIX ANALYSIS FOR NOESY AND ROESY NMR-SPECTROSCOPY

被引:64
作者
LEEFLANG, BR
KROONBATENBURG, LMJ
机构
[1] UNIV UTRECHT,BIJVOET CTR,DEPT BIOORGAN CHEM,3584 CH UTRECHT,NETHERLANDS
[2] UNIV UTRECHT,BIJVOET CTR,DEPT CRYSTAL & STRUCT CHEM,3584 CH UTRECHT,NETHERLANDS
关键词
ROESY; RELAXATION MATRIX ANALYSIS; ANISOTROPIC MOTION; INTERNAL MOTION; MOLECULAR DYNAMICS; HOHAHA CORRECTION;
D O I
10.1007/BF02192812
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A method is proposed for quantitative analysis of ROESY peak intensities, to which corrections are applied for their offset dependence and for direct HOHAHA effects. Additionally the effects of anisotropic and internal motion can be assessed. This method has been implemented for full relaxation matrix analysis in the CROSREL program. Although CROSREL is applicable to NOESY data, its use for ROESY peak intensities has been evaluated here, because of its innovative character in this respect. The agreement between calculated and experimental intensities is expressed by a weighted residual R(w) factor, similar to X-ray crystallography. The merits of the program have been tested on methyl(d3) beta-cellobioside, for which a ROESY build-up series has been acquired, and for which extensive MD simulations have been performed. It is concluded that correction for direct HOHAHA effects is obligatory for the analysis of ROESY data. Extension of the model for methyl beta-cellobioside with internal and anisotropic motion, as was derived from MD data, did not improve the results obtained for assumed isotropic tumbling of a rigid model. It has been shown that ROESY peak intensities can be analysed successfully by the CROSREL program.
引用
收藏
页码:495 / 518
页数:24
相关论文
共 38 条
[1]   PRACTICAL ASPECTS OF TWO-DIMENSIONAL TRANSVERSE NOE SPECTROSCOPY [J].
BAX, A ;
DAVIS, DG .
JOURNAL OF MAGNETIC RESONANCE, 1985, 63 (01) :207-213
[2]   CORRECTION OF CROSS-PEAK INTENSITIES IN 2D SPIN-LOCKED NOE SPECTROSCOPY FOR OFFSET AND HARTMANN-HAHN EFFECTS [J].
BAX, A .
JOURNAL OF MAGNETIC RESONANCE, 1988, 77 (01) :134-147
[3]   RELAXATION EFFECTS IN NUCLEAR MAGNETIC RESONANCE ABSORPTION [J].
BLOEMBERGEN, N ;
PURCELL, EM ;
POUND, RV .
PHYSICAL REVIEW, 1948, 73 (07) :679-712
[4]   ITERATIVE PROCEDURE FOR STRUCTURE DETERMINATION FROM PROTON PROTON NOES USING A FULL RELAXATION MATRIX APPROACH - APPLICATION TO A DNA OCTAMER [J].
BOELENS, R ;
KONING, TMG ;
VANDERMAREL, GA ;
VANBOOM, JH ;
KAPTEIN, R .
JOURNAL OF MAGNETIC RESONANCE, 1989, 82 (02) :290-308
[5]   DETERMINATION OF BIOMOLECULAR STRUCTURES FROM PROTON-PROTON NOES USING A RELAXATION MATRIX APPROACH [J].
BOELENS, R ;
KONING, TMG ;
KAPTEIN, R .
JOURNAL OF MOLECULAR STRUCTURE, 1988, 173 :299-311
[6]   RELAXATION MATRIX ANALYSIS OF 2D-NMR DATA [J].
BORGIAS, BA ;
GOCHIN, M ;
KERWOOD, DJ ;
JAMES, TL .
PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY, 1990, 22 :83-100
[7]   STRUCTURE DETERMINATION OF A TETRASACCHARIDE - TRANSIENT NUCLEAR OVERHAUSER EFFECTS IN THE ROTATING FRAME [J].
BOTHNERBY, AA ;
STEPHENS, RL ;
LEE, JM ;
WARREN, CD ;
JEANLOZ, RW .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1984, 106 (03) :811-813
[8]   TIME DEVELOPMENT OF NUCLEAR OVERHAUSER EFFECTS IN MULTISPIN SYSTEMS [J].
BOTHNERBY, AA ;
NOGGLE, JH .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1979, 101 (18) :5152-5155
[9]   CONFORMATIONAL-ANALYSIS OF THE SIALYL-ALPHA-(2-]3/6)N-ACETYLLACTOSAMINE STRUCTURAL ELEMENT OCCURRING IN GLYCOPROTEINS, BY TWO-DIMENSIONAL NOE H-1-NMR SPECTROSCOPY IN COMBINATION WITH ENERGY CALCULATIONS BY HARD-SPHERE EXO-ANOMERIC AND MOLECULAR MECHANICS FORCE-FIELD WITH HYDROGEN-BONDING POTENTIAL [J].
BREG, J ;
KROONBATENBURG, LMJ ;
STRECKER, G ;
MONTREUIL, J ;
VLIEGENTHART, JFG .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1989, 178 (03) :727-739
[10]   PROBING THE 3-DIMENSIONAL STRUCTURES OF DNA AND RNA OLIGONUCLEOTIDES IN SOLUTION BY NUCLEAR OVERHAUSER ENHANCEMENT MEASUREMENTS [J].
CLORE, GM ;
GRONENBORN, AM .
FEBS LETTERS, 1985, 179 (02) :187-198