BETA-GLUCOSIDASE, BETA-GALACTOSIDASE, FAMILY-A CELLULASES, FAMILY-F XYLANASES AND 2 BARLEY GLYCANASES FORM A SUPERFAMILY OF ENZYMES WITH 8-FOLD BETA/ALPHA-ARCHITECTURE AND WITH 2 CONSERVED GLUTAMATES NEAR THE CARBOXY-TERMINAL ENDS OF BETA-STRAND-4 AND BETA-STRAND-7

被引:239
作者
JENKINS, J [1 ]
LEGGIO, LL [1 ]
HARRIS, G [1 ]
PICKERSGILL, R [1 ]
机构
[1] INST FOOD RES, READING LAB, DEPT PROT ENGN, PROT CRYSTALLOG, READING RG6 2EF, BERKS, ENGLAND
关键词
SUPERFAMILY; GLYCOSYL HYDROLASE; FAMILY F XYLANASE; 8-FOLD BETA/ALPHA-BARREL; BETA(1-3) AND BETA(1-3,1-4) GLUCANASE;
D O I
10.1016/0014-5793(95)00252-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Comparison of the recently determined crystal structures Pseudomonas fluorescens subsp. cellulosa family F xylanase, (1-3)-beta-glucanase and (1-3,1-4)-beta-glucanase and the catalytic domain of E. coli beta-galactosidase reveals that they belong to a superfamily of 8-fold beta/alpha-barrels with similar amino acid residues at their active sites, In the three families that these enzymes represent, the nucleophile is a glutamate, which is located close to the carboxy-terminus of beta-strand seven, In addition all three enzymes have the sequence asparagine-glutamate close to the carboxy-terminus of beta-strand four. This glutamate has been identified as the acid/base in the family F xylanases and is essential for catalysis in beta-galactosidase. We suggest that the equivalent residue in the barley glucanases is the acid/base. Analysis of the sequences of family 1 beta-glucosidases and family 5 cellulases shows that these enzymes also belong to this superfamily which we call the 4/7 superfamily.
引用
收藏
页码:281 / 285
页数:5
相关论文
共 34 条
[1]   STRUCTURE OF CHICKEN MUSCLE TRIOSE PHOSPHATE ISOMERASE DETERMINED CRYSTALLOGRAPHICALLY AT 2.5A RESOLUTION USING AMINO-ACID SEQUENCE DATA [J].
BANNER, DW ;
BLOOMER, AC ;
PETSKO, GA ;
PHILLIPS, DC ;
POGSON, CI ;
WILSON, IA ;
CORRAN, PH ;
FURTH, AJ ;
MILMAN, JD ;
OFFORD, RE ;
PRIDDLE, JD ;
WALEY, SG .
NATURE, 1975, 255 (5510) :609-614
[2]   THE CATALYTIC DOMAIN OF ENDOGLUCANASE-A FROM CLOSTRIDIUM-CELLULOLYTICUM - EFFECTS OF ARGININE-79 AND HISTIDINE-122 MUTATIONS ON CATALYSIS [J].
BELAICH, A ;
FIEROBE, HP ;
BATY, D ;
BUSETTA, B ;
BAGNARATARDIF, C ;
GAUDIN, C ;
BELAICH, JP .
JOURNAL OF BACTERIOLOGY, 1992, 174 (14) :4677-4682
[3]   PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].
BERNSTEIN, FC ;
KOETZLE, TF ;
WILLIAMS, GJB ;
MEYER, EF ;
BRICE, MD ;
RODGERS, JR ;
KENNARD, O ;
SHIMANOUCHI, T ;
TASUMI, M .
JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) :535-542
[4]   MODE OF ACTION OF 3 ENDO-BETA-1,4-XYLANASES OF STREPTOMYCES-LIVIDANS [J].
BIELY, P ;
KLUEPFEL, D ;
MOROSOLI, R ;
SHARECK, F .
BIOCHIMICA ET BIOPHYSICA ACTA, 1993, 1162 (03) :246-254
[5]   STRUCTURE OF HEN EGG-WHITE LYSOZYME - A 3-DIMENSIONAL FOURIER SYNTHESIS AT 2A RESOLUTION [J].
BLAKE, CCF ;
KOENIG, DF ;
MAIR, GA ;
NORTH, ACT ;
PHILLIPS, DC ;
SARMA, VR .
NATURE, 1965, 206 (4986) :757-&
[6]   IDENTIFICATION OF A PUTATIVE ACTIVE-SITE RESIDUE IN THE EXO-BETA-(1,3)-GLUCANASE OF CANDIDA-ALBICANS [J].
CHAMBERS, RS ;
WALDEN, AR ;
BROOKE, GS ;
CUTFIELD, JF ;
SULLIVAN, PA .
FEBS LETTERS, 1993, 327 (03) :366-369
[7]  
CHEN L, 1993, J BIOL CHEM, V268, P13318
[8]   THE EVOLUTION OF ALPHA-BETA-BARREL ENZYMES [J].
FARBER, GK ;
PETSKO, GA .
TRENDS IN BIOCHEMICAL SCIENCES, 1990, 15 (06) :228-&
[9]   STRUCTURE OF THE BETA-GLUCOSIDASE GENE BGLA OF CLOSTRIDIUM-THERMOCELLUM - SEQUENCE-ANALYSIS REVEALS A SUPERFAMILY OF CELLULASES AND BETA-GLYCOSIDASES INCLUDING HUMAN LACTASE PHLORIZIN HYDROLASE [J].
GRABNITZ, F ;
SEISS, M ;
RUCKNAGEL, KP ;
STAUDENBAUER, WL .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1991, 200 (02) :301-309
[10]   STRUCTURE OF THE CATALYTIC CORE OF THE FAMILY F-XYLANASE FROM PSEUDOMONAS-FLUORESCENS AND IDENTIFICATION OF THE XYLOPENTAOSE-BINDING SITES [J].
HARRIS, GW ;
JENKINS, JA ;
CONNERTON, I ;
CUMMINGS, N ;
LOLEGGIO, L ;
SCOTT, M ;
HAZLEWOOD, GP ;
LAURIE, JI ;
GILBERT, HJ ;
PICKERSGILL, RW .
STRUCTURE, 1994, 2 (11) :1107-1116