COMPILATION OF DNA-SEQUENCES OF ESCHERICHIA-COLI (UPDATE 1993)

被引:23
作者
KROGER, M [1 ]
WAHL, R [1 ]
RICE, P [1 ]
机构
[1] EMBL,D-69117 HEIDELBERG,GERMANY
关键词
D O I
10.1093/nar/21.13.2973
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We have compiled the DNA sequence data for E.coli available from the GENBANK and EMBL data libraries and over a period of several years independently from the literature. This is the fifth listing replacing and increasing the former listings substantially. However, in order to save space this printed version contains DNA sequence information only, if they are publically available in electronic form. The complete compilation including a full set of genetic map data and the E.coli protein index can be obtained in machine readable form from the EMBL data library (ECD release 15) as a part of the CD-ROM issue of the EMBL sequence database, released and updated every three months. After deletion of all detected overlaps a total of 2 353 635 individual bp is found to be determined till the end of April 1993. This corresponds to a total of 49.87% of the entire E. coli chromosome consisting of about 4,720 kbp. This number may actually be higher by 9161 bp derived from other strains of E.coli.
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页码:2973 / 3000
页数:28
相关论文
共 28 条
[1]   LINKAGE MAP OF ESCHERICHIA-COLI K-12, EDITION-8 [J].
BACHMANN, BJ .
MICROBIOLOGICAL REVIEWS, 1990, 54 (02) :130-197
[2]   COSMID-DERIVED MAP OF ESCHERICHIA-COLI STRAIN BHB2600 IN COMPARISON TO THE MAP OF STRAIN W3110 [J].
BIRKENBIHL, RP ;
VIELMETTER, W .
NUCLEIC ACIDS RESEARCH, 1989, 17 (13) :5057-5069
[3]   COMPLETE MAPS OF IS1, IS2, IS3, IS4, IS5, IS30 AND IS150 LOCATIONS IN ESCHERICHIA-COLI-K12 [J].
BIRKENBIHL, RP ;
VIELMETTER, W .
MOLECULAR & GENERAL GENETICS, 1989, 220 (01) :147-153
[4]  
BLATTNER F, 1993, IN PRESS GENOMICS
[5]  
CARATA YD, 1992, J MOL BIOL, V216, P835
[6]   ANALYSIS OF THE ESCHERICHIA-COLI GENOME - DNA-SEQUENCE OF THE REGION FROM 84.5 TO 86.5 MINUTES [J].
DANIELS, DL ;
PLUNKETT, G ;
BURLAND, V ;
BLATTNER, FR .
SCIENCE, 1992, 257 (5071) :771-778
[7]   PHYSICAL MAPPING OF REPETITIVE EXTRAGENIC PALINDROMIC SEQUENCES IN ESCHERICHIA-COLI AND PHYLOGENETIC DISTRIBUTION AMONG ESCHERICHIA-COLI STRAINS AND OTHER ENTERIC BACTERIA [J].
DIMRI, GP ;
RUDD, KE ;
MORGAN, MK ;
BAYAT, H ;
AMES, GFL .
JOURNAL OF BACTERIOLOGY, 1992, 174 (14) :4583-4593
[8]   COMPLETION OF THE DETAILED RESTRICTION MAP OF THE ESCHERICHIA-COLI GENOME BY THE ISOLATION OF OVERLAPPING COSMID CLONES [J].
KNOTT, V ;
BLAKE, DJ ;
BROWNLEE, GG .
NUCLEIC ACIDS RESEARCH, 1989, 17 (15) :5901-5912
[9]   THE PHYSICAL MAP OF THE WHOLE ESCHERICHIA-COLI CHROMOSOME - APPLICATION OF A NEW STRATEGY FOR RAPID ANALYSIS AND SORTING OF A LARGE GENOMIC LIBRARY [J].
KOHARA, Y ;
AKIYAMA, K ;
ISONO, K .
CELL, 1987, 50 (03) :495-508
[10]   COMPILATION OF DNA-SEQUENCES OF ESCHERICHIA-COLI (UPDATE 1990) [J].
KROGER, M ;
WAHL, R ;
RICE, P .
NUCLEIC ACIDS RESEARCH, 1990, 18 :2549-2587