THE STRUCTURE OF ASCARIS HEMOGLOBIN DOMAIN-I AT 2.2 ANGSTROM RESOLUTION - MOLECULAR-FEATURES OF OXYGEN AVIDITY

被引:126
作者
YANG, J
KLOEK, AP
GOLDBERG, DE
MATHEWS, FS
机构
[1] WASHINGTON UNIV, SCH MED, HOWARD HUGHES MED INST, DEPT MOLEC MICROBIOL, ST LOUIS, MO 63110 USA
[2] WASHINGTON UNIV, SCH MED, HOWARD HUGHES MED INST, DEPT MED, ST LOUIS, MO 63110 USA
[3] JEWISH HOSP ST LOUIS, ST LOUIS, MO 63110 USA
[4] WASHINGTON UNIV, SCH MED, DEPT BIOCHEM & MOLEC BIOPHYS, ST LOUIS, MO 63110 USA
关键词
X-RAY CRYSTALLOGRAPHY; OXYGEN BINDING; PROTOPORPHYRIN IX;
D O I
10.1073/pnas.92.10.4224
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The perienteric hemoglobin of the parasitic nematode Ascaris has an exceptionally high affinity for oxygen. It is an octameric protein containing two similar hemebinding domains per subunit, but recombinant constructs expressing a single, monomeric heme-binding domain (domain 1; D1) retain full oxygen avidity. We have solved the crystal structure of D1 at 2.2 Angstrom resolution. Analysis of the structure reveals a characteristic globin fold and illuminates molecular features involved in oxygen avidity of Ascaris perienteric hemoglobin. A strong hydrogen bond between tyrosine at position 10 in the B helix (tyrosine-B10) and the distal oxygen of the ligand, combined with a weak hydrogen bond between glutamine-E7 and the proximal oxygen, grips the ligand in the binding pocket. A third hydrogen bond between these two amino acids appears to stabilize the structure. The B helix of D1 is displaced laterally by 2.5 Angstrom when compared with sperm whale myoglobin. This shifts the tyrosine-B10 hydroxyl far enough from liganded oxygen to form a strong hydrogen bond without steric hindrance. Changes in the F helix compared with myoglobin contribute to a tilted heme that may also be important for oxygen affinity.
引用
收藏
页码:4224 / 4228
页数:5
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