GSA: Genome Sequence Archive

被引：60

作者：

Yanqing Wang ^{[1
]}

Fuhai Song ^{[2
,3
]}

Junwei Zhu ^{[1
]}

Sisi Zhang ^{[1
]}

Yadong Yang ^{[2
,3
]}

Tingting Chen ^{[1
]}

Bixia Tang ^{[1
,3
]}

Lili Dong ^{[1
]}

Nan Ding ^{[2
]}

Qian Zhang ^{[2
]}

Zhouxian Bai ^{[2
,3
]}

Xunong Dong ^{[2
,3
]}

Huanxin Chen ^{[1
]}

Mingyuan Sun ^{[1
]}

Shuang Zhai ^{[1
]}

Yubin Sun ^{[1
]}

Lei Yu ^{[1
]}

Li Lan ^{[1
]}

Jingfa Xiao ^{[1
,2
,3
,4
]}

Xiangdong Fang ^{[2
,3
,4
]}

Hongxing Lei ^{[2
,3
,5
]}

Zhang Zhang ^{[1
,2
,3
,4
]}

Wenming Zhao ^{[1
,3
,4
]}

机构：

[1] BIG Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences

[2] CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences

[3] University of Chinese Academy of Sciences

[4] Collaborative Innovation Center of Genetics and Development, Fudan University

[5] Center of Alzheimer’s Disease, Beijing Institute for Brain Disorders

来源：

Genomics,Proteomics & Bioinformatics | 2017年 / 01期

关键词：

Genome Sequence Archive; GSA; Big data; Raw sequence data; INSDC;

D O I：

暂无

中图分类号：

Q811.4 [生物信息论];

学科分类号：

0711 ; 0831 ;

摘要：

With the rapid development of sequencing technologies towards higher throughput and lower cost, sequence data are generated at an unprecedentedly explosive rate. To provide an efficient and easy-to-use platform for managing huge sequence data, here we present Genome Sequence Archive(GSA; http://bigd.big.ac.cn/gsa or http://gsa.big.ac.cn), a data repository for archiving raw sequence data. In compliance with data standards and structures of the International Nucleotide Sequence Database Collaboration(INSDC), GSA adopts four data objects(Bio Project, Bio Sample,Experiment, and Run) for data organization, accepts raw sequence reads produced by a variety of sequencing platforms, stores both sequence reads and metadata submitted from all over the world,and makes all these data publicly available to worldwide scientific communities. In the era of big data, GSA is not only an important complement to existing INSDC members by alleviating the increasing burdens of handling sequence data deluge, but also takes the significant responsibility for global big data archive and provides free unrestricted access to all publicly available data in support of research activities throughout the world.

引用

页码：14 / 18

页数：5

共 1 条

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Yu Xue ;

EricWubbo Lameijer ;

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Xiaomin Ying ;

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Jun Yu .

Genomics,Proteomics & Bioinformatics, 2016, (05) :253-261

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