基于结构的虚拟筛选技术能更广泛应用于现代药物发现?(英文)

被引:2
作者
V.Leroux
B.Maigret
机构
[1] 法国国家科研中心南锡大学UMRCNRS/UHP,eDAM研究组
关键词
现代药物发现; 基于结构的药物设计; 计算机辅助药物设计; 虚拟筛选; 对接;
D O I
10.16866/j.com.app.chem2007.01.006
中图分类号
R914.2 [药物设计];
学科分类号
100701 ;
摘要
总结了计算机辅助药物设计目前的状况,重点讨论了基于结构类的虚拟筛选方法,特别是分子对接方法。在药物发现过程中,这些方法除了在早期的从数据库到命中阶段可节省费用外,还能提供其他有用信息吗?本综述试图通过探究大量现有对接方法的优缺点来回答这一问题。结果表明:基于结构的药物设计还没有实现其早期的所有目标,还需要广泛深入地进行研究,应用时也需谨慎。令人兴奋的是当与其他互补的药物设计途径,如基于配体的方法,相结合时基于结构的方法是最好的。从这一点上看,基于结构的药物设计方法在现代药物发现这一多学科的交叉领域中还应该发挥更多的作用。
引用
收藏
页码:1 / 10
页数:10
相关论文
共 11 条
[1]  
A fast surface-matching procedure for protein–ligand docking[J] . Michel E. B. Yamagishi,Natália F. Martins,Goran Neshich,Wensheng Cai,Xueguang Shao,Alexandre Beautrait,Bernard Maigret. Journal of Molecular Modeling . 2006 (6)
[2]  
Development and validation of a modular, extensible docking program: DOCK 5[J] . Demetri T. Moustakas,P. Therese Lang,Scott Pegg,Eric Pettersen,Irwin D. Kuntz,Natasja Brooijmans,Robert C. Rizzo. Journal of Computer-Aided Molecular Design . 2006 (10)
[3]   Comparative study of several algorithms for flexible ligand docking [J].
Bursulaya, BD ;
Totrov, M ;
Abagyan, R ;
Brooks, CL .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2003, 17 (11) :755-763
[4]  
DOCK 4.0: Search strategies for automated molecular docking of flexible molecule databases[J] . Todd J.A. Ewing,Shingo Makino,A. Geoffrey Skillman,Irwin D. Kuntz. Journal of Computer-Aided Molecular Design . 2001 (5)
[5]   Optimization of the drug-likeness of chemical libraries [J].
Sadowski, J .
PERSPECTIVES IN DRUG DISCOVERY AND DESIGN, 2000, 20 (01) :17-28
[6]  
Identification of ligands for RNA targets via structure-based virtual screening: HIV-1 TAR[J] . Anton V. Filikov,Venkatraman Mohan,Timothy A. Vickers,Richard H. Griffey,P. Dan Cook,Ruben A. Abagyan,Thomas L. James. Journal of Computer-Aided Molecular Design . 2000 (6)
[7]   Deciphering common failures in molecular docking of ligand-protein complexes [J].
Verkhivker, GM ;
Bouzida, D ;
Gehlhaar, DK ;
Rejto, PA ;
Arthurs, S ;
Colson, AB ;
Freer, ST ;
Larson, V ;
Luty, BA ;
Marrone, T ;
Rose, PW .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2000, 14 (08) :731-751
[8]  
Fulfilling the promise: drug discovery in the post-genomic era .2 Chanda SK,and Caldwell JS. Drug Discovery Today . 2003
[9]  
Compounds designed to fit a site of known structure in human haemoglobin .2 Beddell CR,Goodford PJ,Norrington FE,Wilkinson S,and Wootton R. British Journal of Pharmacology . 1976
[10]  
Neural Networks in Chemistry and Drug Design .2 Zapan J,and Gasteiger J. Wiley-VCH . 1999