Modeling supramolecular assemblages

被引:16
作者
Elcock, AH [1 ]
机构
[1] Univ Iowa, Dept Biochem, Iowa City, IA 52242 USA
关键词
D O I
10.1016/S0959-440X(02)00303-2
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
There has been some progress (but not much) in simulating supramolecular assemblages in the past year. The two main technical advances have been, firstly, the establishment of a protocol for extracting equilibrium thermodynamic data from forced (i.e. nonequilibrium) simulations and experiments, and, secondly, the development of a method for accurately calculating the electrostatics of enormous systems. Some recent applications have demonstrated the increasing feasibility of performing meaningful simulations of very large systems.
引用
收藏
页码:154 / 160
页数:7
相关论文
共 57 条
  • [1] Anisotropy of fluctuation dynamics of proteins with an elastic network model
    Atilgan, AR
    Durell, SR
    Jernigan, RL
    Demirel, MC
    Keskin, O
    Bahar, I
    [J]. BIOPHYSICAL JOURNAL, 2001, 80 (01) : 505 - 515
  • [2] Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential
    Bahar, I
    Atilgan, AR
    Erman, B
    [J]. FOLDING & DESIGN, 1997, 2 (03): : 173 - 181
  • [3] Electrostatics of nanosystems: Application to microtubules and the ribosome
    Baker, NA
    Sept, D
    Joseph, S
    Holst, MJ
    McCammon, JA
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (18) : 10037 - 10041
  • [4] The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
    Ban, N
    Nissen, P
    Hansen, J
    Moore, PB
    Steitz, TA
    [J]. SCIENCE, 2000, 289 (5481) : 905 - 920
  • [5] Computational modeling predicts the structure and dynamics of chromatin fiber
    Beard, DA
    Schlick, T
    [J]. STRUCTURE, 2001, 9 (02) : 105 - 114
  • [6] Collective protein dynamics in relation to function
    Berendsen, HJC
    Hayward, S
    [J]. CURRENT OPINION IN STRUCTURAL BIOLOGY, 2000, 10 (02) : 165 - 169
  • [7] Energetics of ion conduction through the K+ channel
    Bernèche, S
    Roux, B
    [J]. NATURE, 2001, 414 (6859) : 73 - 77
  • [8] BEVERIDGE DL, 1998, CURR OPIN STRUC BIOL, V10, P182
  • [9] Nanoseconds molecular dynamics simulation of primary mechanical energy transfer steps in F1-ATP synthase
    Böckmann, RA
    Grubmüller, H
    [J]. NATURE STRUCTURAL BIOLOGY, 2002, 9 (03) : 198 - 202
  • [10] BETWEEN OBJECTIVITY AND SUBJECTIVITY
    BRANDEN, CI
    JONES, TA
    [J]. NATURE, 1990, 343 (6260) : 687 - 689