Inputs and outputs for chromatin-targeted RNAi

被引:26
作者
Chan, Simon W-L. [1 ]
机构
[1] Univ Calif Davis, Dept Plant Biol, Davis, CA 95616 USA
关键词
D O I
10.1016/j.tplants.2008.05.001
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Plant gene silencing is targeted to transposons and repeated sequences by small RNAs from the RNA interference (RNAi) pathway. Like classical RNAi, RNA-directed chromatin silencing involves the cleavage of double-stranded RNA by Dicer endonucleases to create small interfering RNAs (siRNAs), which bind to the Argonaute protein. The production of double-stranded RNA (dsRNA) must be carefully controlled to prevent inappropriate silencing. A plant-specific RNA polymerase IV (Pol IV) initiates siRNA production at silent heterochromatin, but Pol IV-independent mechanisms for making dsRNA also exist. Downstream of siRNA biogenesis, multiple chromatin marks might be targeted by Argonaute-siRNA complexes, yet mechanisms of chromatin modification remain poorly understood. Genomic studies of siRNA target loci promise to reveal novel biological functions for chromatin-targeted RNAi.
引用
收藏
页码:383 / 389
页数:7
相关论文
共 72 条
[1]   An RNA-dependent RNA polymerase is required for paramutation in maize [J].
Alleman, Mary ;
Sidorenko, Lyudmila ;
McGinnis, Karen ;
Seshadri, Vishwas ;
Dorweiler, Jane E. ;
White, Joshua ;
Sikkink, Kristin ;
Chandler, Vicki L. .
NATURE, 2006, 442 (7100) :295-298
[2]   Widespread role for the flowering-time regulators FCA and FPA in RNA-mediated chromatin silencing [J].
Baeurle, Isabel ;
Smith, Lisa ;
Baulcombe, David C. ;
Dean, Caroline .
SCIENCE, 2007, 318 (5847) :109-112
[3]   Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene [J].
Bartee, L ;
Malagnac, F ;
Bender, J .
GENES & DEVELOPMENT, 2001, 15 (14) :1753-1758
[4]   A branched pathway for transgene-induced RNA silencing in plants [J].
Béclin, C ;
Boutet, S ;
Waterhouse, P ;
Vaucheret, H .
CURRENT BIOLOGY, 2002, 12 (08) :684-688
[5]   Requirement of heterochromatin for cohesion at centromeres [J].
Bernard, P ;
Maure, JF ;
Partridge, JF ;
Genier, S ;
Javerzat, JP ;
Allshire, RC .
SCIENCE, 2001, 294 (5551) :2539-2542
[6]   Arabidopsis HEN1:: A genetic link between endogenous miRNA controlling development and siRNA controlling transgene silencing and virus resistance [J].
Boutet, S ;
Vazquez, F ;
Liu, J ;
Béclin, C ;
Fagard, M ;
Gratias, A ;
Morel, JB ;
Crété, P ;
Chen, XM ;
Vaucheret, H .
CURRENT BIOLOGY, 2003, 13 (10) :843-848
[7]   Nuclear gene silencing directs reception of long-distance mRNA silencing in Arabidopsis [J].
Brosnan, C. A. ;
Mitter, N. ;
Christie, M. ;
Smith, N. A. ;
Waterhouse, P. M. ;
Carroll, B. J. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (37) :14741-14746
[8]   Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing [J].
Cao, XF ;
Jacobsen, SE .
CURRENT BIOLOGY, 2002, 12 (13) :1138-1144
[9]   Role of the DRM and CMT3 Methyltransferases in RNA-directed DNA methylation [J].
Cao, XF ;
Aufsatz, W ;
Zilberman, D ;
Mette, MF ;
Huang, MS ;
Matzke, M ;
Jacobsen, SE .
CURRENT BIOLOGY, 2003, 13 (24) :2212-2217
[10]   On the origin and functions of RNA-mediated silencing: from protists to man [J].
Cerutti, Heriberto ;
Casas-Mollano, J. Armando .
CURRENT GENETICS, 2006, 50 (02) :81-99