Phylocom: software for the analysis of phylogenetic community structure and trait evolution

被引：1415

作者：

Webb, Campbell O. ^{[1
]}

Ackerly, David D. ^{[2
]}

Kembel, Steven W. ^{[2
]}

机构：

[1] Harvard Univ, Arnold Arboretum, Cambridge, MA 02138 USA

[2] Univ Calif Berkeley, Dept Integrat Biol, Berkeley, CA 94720 USA

来源：

BIOINFORMATICS | 2008年 / 24卷 / 18期

关键词：

D O I：

10.1093/bioinformatics/btn358

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Motivation: The increasing availability of phylogenetic and trait data for communities of co-occurring species has created a need for software that integrates ecological and evolutionary analyses. Capabilities: Phylocom calculates numerous metrics of phylogenetic community structure and trait similarity within communities. Hypothesis testing is implemented using several null models. Within the same framework, it measures phylogenetic signal and correlated evolution for species traits. A range of utility functions allow community and phylogenetic data manipulation, tree and trait generation, and integration into scientific workflows.

引用

页码：2098 / 2100

页数：3

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