Maximum-likelihood density modification using pattern recognition of structural motifs

被引：161

作者：

Terwilliger, TC ^{[1
]}

机构：

[1] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM 87545 USA

来源：

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2001年 / 57卷

关键词：

D O I：

10.1107/S0907444901013737

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

A likelihood-based density-modification method is extended to include pattern recognition of structural motifs.

引用

页码：1755 / 1762

页数：8

共 40 条

[1] Bias reduction in phase refinement by modified interference functions: Introducing the gamma correction [J].

Abrahams, JP .

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1997, 53 :371-376

[2] Methods used in the structure determination of bovine mitochondrial F-1 ATPase [J].

Abrahams, JP ;

Leslie, AGW .

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1996, 52 :30-42

[3] PRISM - TOPOLOGICALLY CONSTRAINED PHASE REFINEMENT FOR MACROMOLECULAR CRYSTALLOGRAPHY [J].

BAKER, D ;

BYSTROFF, C ;

FLETTERICK, RJ ;

AGARD, DA .

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1993, 49 :429-439

[4] SIMULATED ANNEALING FOR PHASING USING SPATIAL CONSTRAINTS [J].

BERAN, P ;

SZOKE, A .

ACTA CRYSTALLOGRAPHICA SECTION A, 1995, 51 :20-27

[5] A BAYESIAN STATISTICAL-THEORY OF THE PHASE PROBLEM .1. A MULTICHANNEL MAXIMUM-ENTROPY FORMALISM FOR CONSTRUCTING GENERALIZED JOINT PROBABILITY-DISTRIBUTIONS OF STRUCTURE FACTORS [J].

BRICOGNE, G .

ACTA CRYSTALLOGRAPHICA SECTION A, 1988, 44 :517-545

[6] MAXIMUM-ENTROPY AND THE FOUNDATIONS OF DIRECT METHODS [J].

BRICOGNE, G .

ACTA CRYSTALLOGRAPHICA SECTION A, 1984, 40 (JUL) :410-445

[7] Crystal structure of R-phycoerythrin from Polysiphonia urceolata at 2.8 angstrom resolution [J].

Chang, WR ;

Jiang, T ;

Wan, ZL ;

Zhang, JP ;

Yang, ZX ;

Liang, DC .

JOURNAL OF MOLECULAR BIOLOGY, 1996, 262 (05) :721-731

[8] Modified phased translation functions and their application to molecular-fragment location [J].

Cowtan, K .

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :750-756

[9] Phase combination and cross validation in iterated density-modification calculations [J].

Cowtan, KD ;

Main, P .

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1996, 52 :43-48

[10] IMPROVEMENT OF MACROMOLECULAR ELECTRON-DENSITY MAPS BY THE SIMULTANEOUS APPLICATION OF REAL AND RECIPROCAL SPACE CONSTRAINTS [J].

COWTAN, KD ;

MAIN, P .

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1993, 49 :148-157

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