Models for dioxygen activation by the CuB site of dopamine β-monooxygenase and peptidylglycine α-hydroxylating monooxygenase

被引:40
作者
Gherman, BF
Heppner, DE
Tolman, WB
Cramer, CJ
机构
[1] Univ Minnesota, Dept Chem, Minneapolis, MN 55455 USA
[2] Univ Minnesota, Inst Supercomp, Minneapolis, MN 55455 USA
来源
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY | 2006年 / 11卷 / 02期
关键词
density functional theory; copper peroxide; copper superoxide; dopamine beta-monooxygenase; peptidylglycine alpha-hydroxylating monooxygenase;
D O I
10.1007/s00775-005-0066-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
On the basis of spectroscopic and crystallographic data for dopamine beta-monooxygenase and peptidylglycine alpha-hydroxylating monooxygenase (PHM), a variety of ligand sets have been used to model the oxygen-binding Cu site in these enzymes. Calculations which employed a combination of density functional and multireference second-order perturbation theory methods provided insights into the optimal ligand set for supporting eta(1) superoxo coordination as seen in a crystal structure of a precatalytic Cu/O-2 complex for PHM (Prigge et al. in Science 304:864-867, 2004). Anionic ligand sets stabilized eta(2) dioxygen coordination and were found to lead to more peroxo-like Cu-O-2 complexes with relatively exergonic binding free energies, suggesting that these adducts may be unreactive towards substrates. Neutral ligand sets (including a set of two imidazoles and a thioether), on the other hand, energetically favored eta(1) dioxygen coordination and exhibited limited dioxygen reduction. Binding free energies for the 1:1 adducts with Cu supported by the neutral ligand sets were also higher than with their anionic counterparts. Deviations between the geometry and energetics of the most analogous models and the PHM crystal structures suggest that the protein environment influences the coordination geometry at the Cu-B site and increases the lability of water bound to the preoxygenated reduced form. Another implication is that a neutral ligand set will be critical in biomimetic models in order to stabilize eta(1) dioxygen coordination.
引用
收藏
页码:197 / 205
页数:9
相关论文
共 71 条
  • [1] Dioxygen activation at a single copper site:: Structure, bonding, and mechanism of formation of 1:1 Cu-O2 adducts
    Aboelella, NW
    Kryatov, SV
    Gherman, BF
    Brennessel, WW
    Young, VG
    Sarangi, R
    Rybak-Akimova, EV
    Hodgson, KO
    Hedman, B
    Solomon, EI
    Cramer, CJ
    Tolman, WB
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (51) : 16896 - 16911
  • [2] 2ND-ORDER PERTURBATION-THEORY WITH A COMPLETE ACTIVE SPACE SELF-CONSISTENT FIELD REFERENCE FUNCTION
    ANDERSSON, K
    MALMQVIST, PA
    ROOS, BO
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1992, 96 (02) : 1218 - 1226
  • [3] [Anonymous], 1985, HDB CHEM PHYS
  • [4] [Anonymous], J CHEM SOC P2
  • [5] THE ABINITIO MODEL POTENTIAL METHOD - COWAN-GRIFFIN RELATIVISTIC CORE POTENTIALS AND VALENCE BASIS-SETS FROM LI (Z = 3) TO LA (Z = 57)
    BARANDIARAN, Z
    SEIJO, L
    [J]. CANADIAN JOURNAL OF CHEMISTRY, 1992, 70 (02) : 409 - 415
  • [6] A MODIFICATION OF THE GAUSSIAN-2 APPROACH USING DENSITY-FUNCTIONAL THEORY
    BAUSCHLICHER, CW
    PARTRIDGE, H
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1995, 103 (05) : 1788 - 1791
  • [7] A NEW MIXING OF HARTREE-FOCK AND LOCAL DENSITY-FUNCTIONAL THEORIES
    BECKE, AD
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (02) : 1372 - 1377
  • [8] Major changes in copper coordination accompany reduction of peptidylglycine monooxygenase: implications for electron transfer and the catalytic mechanism
    Blackburn, NJ
    Rhames, FC
    Ralle, M
    Jaron, S
    [J]. JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2000, 5 (03): : 341 - 353
  • [9] BLACKBURN NJ, 1991, J BIOL CHEM, V266, P23120
  • [10] Structural investigations on the coordination environment of the active-site copper centers of recombinant bifunctional peptidylglycine alpha-amidating enzyme
    Boswell, JS
    Reedy, BJ
    Kulathila, R
    Merkler, D
    Blackburn, NJ
    [J]. BIOCHEMISTRY, 1996, 35 (38) : 12241 - 12250