Metabolic studies in plant organs: don't forget dilution by growth

被引：33

作者：

Genard, Michel ^{[1
]}

Baldazzi, Valentina ^{[1
]}

Gibon, Yves ^{[2
]}

机构：

[1] INRA, Plantes & Syst Culture Hort UR 1115, Avignon, France

[2] INRA, Biol Fruit & Pathol UMR1332, Villenave Dornon, France

来源：

FRONTIERS IN PLANT SCIENCE | 2014年 / 5卷

关键词：

concentration; correlation; dilution; growth; metabolic; subcellular; FRUIT-DEVELOPMENT; ENZYME-ACTIVITIES; SYSTEMS BIOLOGY; ARABIDOPSIS; NETWORKS; TRANSCRIPT; REVEALS; PREDICTION; ORGANELLES; PROFILES;

D O I：

10.3389/fpls.2014.00085

中图分类号：

Q94 [植物学];

学科分类号：

071001 ;

摘要：

[No abstract available]

引用

页数：5

共 39 条

[1] Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments [J].

Bullard, James H. ;

Purdom, Elizabeth ;

Hansen, Kasper D. ;

Dudoit, Sandrine .

BMC BIOINFORMATICS, 2010, 11

[2] Untargeted Metabolic Quantitative Trait Loci Analyses Reveal a Relationship between Primary Metabolism and Potato Tuber Quality [J].

Carreno-Quintero, Natalia ;

Acharjee, Animesh ;

Maliepaard, Chris ;

Bachem, Christian W. B. ;

Mumm, Roland ;

Bouwmeester, Harro ;

Visser, Richard G. F. ;

Keurentjes, Joost J. B. .

PLANT PHYSIOLOGY, 2012, 158 (03) :1306-1318

[3] Statistical protein quantification and significance analysis in label-free LC-MS experiments with complex designs [J].

Clough, Timothy ;

Thaminy, Safia ;

Ragg, Susanne ;

Aebersold, Ruedi ;

Vitek, Olga .

BMC BIOINFORMATICS, 2012, 13 :S6

[4] Variation of enzyme activities and metabolite levels in 24 arabidopsis accessions growing in carbon-limited conditions [J].

Cross, Joanna M. ;

von Korff, Maria ;

Altmann, Thomas ;

Bartzetko, Linda ;

Sulpice, Ronan ;

Gibon, Yves ;

Palacios, Natalia ;

Stitt, Mark .

PLANT PHYSIOLOGY, 2006, 142 (04) :1574-1588

[5] On the Discordance of Metabolomics with Proteomics and Transcriptomics: Coping with Increasing Complexity in Logic, Chemistry, and Network Interactions [J].

Fernie, Alisdair R. ;

Stitt, Mark .

PLANT PHYSIOLOGY, 2012, 158 (03) :1139-1145

[6] MEASUREMENT OF SUBCELLULAR METABOLITE LEVELS IN LEAVES BY FRACTIONATION OF FREEZE-STOPPED MATERIAL IN NONAQUEOUS MEDIA [J].

GERHARDT, R ;

HELDT, HW .

PLANT PHYSIOLOGY, 1984, 75 (03) :542-547

[7] A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays:: Comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness [J].

Gibon, Y ;

Blaesing, OE ;

Hannemann, J ;

Carillo, P ;

Höhne, M ;

Hendriks, JHM ;

Palacios, N ;

Cross, J ;

Selbig, J ;

Stitt, M .

PLANT CELL, 2004, 16 (12) :3304-3325

[8] Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes [J].

Gibon, Yves ;

Usadel, Bjoern ;

Blaesing, Oliver E. ;

Kamlage, Beate ;

Hoehne, Melanie ;

Trethewey, Richard ;

Stitt, Mark .

GENOME BIOLOGY, 2006, 7 (08)

[9] Flux Balance Analysis of Barley Seeds: A Computational Approach to Study Systemic Properties of Central Metabolism [J].

Grafahrend-Belau, Eva ;

Schreiber, Falk ;

Koschuetzki, Dirk ;

Junker, Bjoern H. .

PLANT PHYSIOLOGY, 2009, 149 (01) :585-598

[10] Metabolic network reconstruction and flux variability analysis of storage synthesis in developing oilseed rape (Brassica napus L.) embryos [J].

Hay, Jordan ;

Schwender, Joerg .

PLANT JOURNAL, 2011, 67 (03) :526-541

← 1 2 3 4 →