Molecular Evolution of Human Coronavirus Genomes

被引:541
作者
Forni, Diego [1 ]
Cagliani, Rachele [1 ]
Clerici, Mario [2 ,3 ]
Sironi, Manuela [1 ]
机构
[1] Sci Inst IRCCS E MEDEA, Bioinformat, Bosisio Parini, Italy
[2] Univ Milan, Dept Physiopathol & Transplantat, Milan, Italy
[3] Don C Gnocchi Fdn ONLUS, IRCCS, Milan, Italy
关键词
ACUTE RESPIRATORY SYNDROME; RECEPTOR-BINDING DOMAIN; HEMAGGLUTININ-ESTERASE PROTEIN; DETECTING POSITIVE SELECTION; AMINO-ACID SUBSTITUTIONS; MURINE CORONAVIRUS; SARS-CORONAVIRUS; PHYLOGENETIC ANALYSIS; ACCESSORY PROTEIN; VIRUS-REPLICATION;
D O I
10.1016/j.tim.2016.09.001
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Human coronaviruses (HCoVs), including SARS-CoV and MERS-CoV, are zoonotic pathogens that originated in wild animals. HCoVs have large genomes that encode a fixed array of structural and nonstructural components, as well as a variety of accessory proteins that differ in number and sequence even among closely related CoVs. Thus, in addition to recombination and mutation, HCoV genomes evolve through gene gains and losses. In this review we summarize recent findings on the molecular evolution of HCoV genomes, with special attention to recombination and adaptive events that generated new viral species and contributed to host shifts and to HCoV emergence.
引用
收藏
页码:35 / 48
页数:14
相关论文
共 90 条
[1]   Molecular epidemiology and evolutionary histories of human coronavirus OC43 and HKU1 among patients with upper respiratory tract infections in Kuala Lumpur, Malaysia [J].
Al-Khannaq, Maryam Nabiel ;
Ng, Kim Tien ;
Oong, Xiang Yong ;
Pang, Yong Kek ;
Takebe, Yutaka ;
Chook, Jack Bee ;
Hanafi, Nik Sherina ;
Kamarulzaman, Adeeba ;
Tee, Kok Keng .
VIROLOGY JOURNAL, 2016, 13
[2]  
Anisimova M, 2003, GENETICS, V164, P1229
[3]   The SARS-coronavirus papain-like protease: Structure, function and inhibition by designed antiviral compounds [J].
Baez-Santos, Yahira M. ;
St John, Sarah E. ;
Mesecar, Andrew D. .
ANTIVIRAL RESEARCH, 2015, 115 :21-38
[4]   Molecular phylogeny and divergence times of deuterostome animals [J].
Blair, JE ;
Hedges, SB .
MOLECULAR BIOLOGY AND EVOLUTION, 2005, 22 (11) :2275-2284
[5]   Interspecies transmission and emergence of novel viruses: lessons from bats and birds [J].
Chan, Jasper Fuk-Woo ;
To, Kelvin Kai-Wang ;
Tse, Herman ;
Jin, Dong-Yan ;
Yuen, Kwok-Yung .
TRENDS IN MICROBIOLOGY, 2013, 21 (10) :544-555
[6]   Structural Analysis of the Evolutionary Origins of Influenza Virus Hemagglutinin and Other Viral Lectins [J].
Chen, Lang ;
Li, Fang .
JOURNAL OF VIROLOGY, 2013, 87 (07) :4118-4120
[7]   Structural basis for multifunctional roles of mammalian aminopeptidase N [J].
Chen, Lang ;
Lin, Yi-Lun ;
Peng, Guiqing ;
Li, Fang .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (44) :17966-17971
[8]   Evidence for an Ancestral Association of Human Coronavirus 229E with Bats [J].
Corman, Victor Max ;
Baldwin, Heather J. ;
Tateno, Adriana Fumie ;
Zerbinati, Rodrigo Melim ;
Annan, Augustina ;
Owusu, Michael ;
Nkrumah, Evans Ewald ;
Maganga, Gael Darren ;
Oppong, Samuel ;
Adu-Sarkodie, Yaw ;
Vallo, Peter ;
Ribeiro Ferreira da Silva Filho, Luiz Vicente ;
Leroy, Eric M. ;
Thiel, Volker ;
van der Hoek, Lia ;
Poon, Leo L. M. ;
Tschapka, Marco ;
Drosten, Christian ;
Drexler, Jan Felix .
JOURNAL OF VIROLOGY, 2015, 89 (23) :11858-11870
[9]   Rooting the Phylogenetic Tree of Middle East Respiratory Syndrome Coronavirus by Characterization of a Conspecific Virus from an African Bat [J].
Corman, Victor Max ;
Ithete, Ndapewa Laudika ;
Richards, Leigh Rosanne ;
Schoeman, M. Corrie ;
Preiser, Wolfgang ;
Drosten, Christian ;
Drexler, Jan Felix .
JOURNAL OF VIROLOGY, 2014, 88 (19) :11297-11303
[10]   Spread, Circulation, and Evolution of the Middle East Respiratory Syndrome Coronavirus [J].
Cotten, Matthew ;
Watson, Simon J. ;
Zumla, Alimuddin I. ;
Makhdoom, Hatem Q. ;
Palser, Anne L. ;
Ong, Swee Hoe ;
Al Rabeeah, Abdullah A. ;
Alhakeem, Rafat F. ;
Assiri, Abdullah ;
Al-Tawfiq, Jaffar A. ;
Albarrak, Ali ;
Barry, Mazin ;
Shibl, Atef ;
Alrabiah, Fahad A. ;
Hajjar, Sami ;
Balkhy, Hanan H. ;
Flemban, Hesham ;
Rambaut, Andrew ;
Kellam, Paul ;
Memish, Ziad A. .
MBIO, 2014, 5 (01)