Linkage analyses in Caribbean Hispanic families identify novel loci associated with familial late-onset Alzheimer's disease

被引:20
作者
Barral, Sandra [1 ,2 ,3 ,4 ]
Cheng, Rong [1 ,2 ]
Reitz, Christiane [1 ,2 ,3 ,4 ,5 ]
Vardarajan, Badri [1 ,2 ,3 ,4 ]
Lee, Joseph [1 ,2 ,5 ]
Kunkle, Brian [7 ]
Beecham, Gary [7 ]
Cantwell, Laura S. [8 ]
Pericak-Vance, Margaret A. [7 ,9 ]
Farrer, Lindsay A. [10 ,11 ,12 ,13 ,14 ]
Haines, Jonathan L. [15 ]
Goate, Alison M. [16 ]
Foroud, Tatiana [17 ]
Boerwinkle, Eric [4 ,6 ,18 ]
Schellenberg, Gerard D. [8 ]
Mayeux, Richard [1 ,2 ,3 ,4 ,5 ]
机构
[1] Columbia Univ, Med Ctr, Taub Inst Res Alzheimers Dis & Aging Brain, New York, NY 10027 USA
[2] Columbia Univ, Med Ctr, Gertrude H Sergievsky Ctr, New York, NY USA
[3] Columbia Univ, Med Ctr, Dept Neurol, New York, NY USA
[4] New York Presbyterian Hosp, New York, NY USA
[5] Columbia Univ, Sch Publ Hlth, Dept Epidemiol, New York, NY USA
[6] Univ Texas Sch Publ Hlth Houston, Dept Epidemiol Human Genet & Environm Sci EHGES, Houston, TX USA
[7] Univ Miami, John P Hussman Inst Human Genom, Miami, FL USA
[8] Univ Penn, Perelman Sch Med, Philadelphia, PA 19104 USA
[9] Univ Miami, Miller Sch Med, Dr John T Macdonald Fdn, Dept Human Genet, Miami, FL 33136 USA
[10] Boston Univ, Sch Publ Hlth, Dept Biostat, Boston, MA USA
[11] Boston Univ, Sch Med & Publ Hlth, Dept Med Biomed Genet, Boston, MA 02215 USA
[12] Boston Univ, Sch Med & Publ Hlth, Dept Neurol, Boston, MA 02215 USA
[13] Boston Univ, Sch Med & Publ Hlth, Dept Ophthalmol, Boston, MA 02215 USA
[14] Boston Univ, Sch Med & Publ Hlth, Dept Epidemiol, Boston, MA 02215 USA
[15] Case Western Reserve Univ, Dept Epidemiol & Biostat, Cleveland, OH 44106 USA
[16] Icahn Sch Med Mt Sinai, Dept Neurosci, New York, NY 10029 USA
[17] Indiana Univ Sch Med, Dept Med & Mol Genet, Indianapolis, IN 46202 USA
[18] Univ Texas Hlth Sci Ctr Houston, Sch Publ Hlth, Ctr Human Genet, Houston, TX 77030 USA
基金
美国国家卫生研究院;
关键词
Caribbean Hispanic families; Late-onset Alzheimer's disease; Linkage analysis; Joint linkage and association; MISSENSE MUTATIONS; GENE; DIAGNOSIS; VARIANTS; ZINC; IDENTIFICATION; CONFIRMATION; METAANALYSIS; POPULATION; SIMULATION;
D O I
10.1016/j.jalz.2015.07.487
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
Introduction: We performed linkage analyses in Caribbean Hispanic families with multiple late-onset Alzheimer's disease (LOAD) cases to identify regions that may contain disease causative variants. Methods: We selected 67 LOAD families to perform genome-wide linkage scan. Analysis of the linked regions was repeated using the entire sample of 282 families. Validated chromosomal regions were analyzed using joint linkage and association. Results: We identified 26 regions linked to LOAD(HLOD >= 3.6). We validated 13 of the regions (HLOD >= 2.5) using the entire family sample. The strongest signal was at 11q12.3 (rs2232932: HLODmax = 4.7, P-joint = 6.6 x 10(-6)), a locus located similar to 2 Mb upstream of the membrane-spanning 4A gene cluster. We additionally identified a locus at 7p14.3 (rs10255835: HLODmax = 4.9, P-joint = 1.2 x 10(-5)), a region harboring genes associated with the nervous system (GARS, GHRHR, and NEUROD6). Discussion: Future sequencing efforts should focus on these regions because they may harbor familial LOAD causative mutations. (C) 2015 The Alzheimer's Association. Published by Elsevier Inc. All rights reserved.
引用
收藏
页码:1397 / 1406
页数:10
相关论文
共 56 条
[1]   Direct power comparisons between simple LOD scores and NPL scores for linkage analysis in complex diseases [J].
Abreu, PC ;
Greenberg, DA ;
Hodge, SE .
AMERICAN JOURNAL OF HUMAN GENETICS, 1999, 65 (03) :847-857
[2]   Optimal ascertainment strategies to detect linkage to common disease alleles [J].
Baron, M .
AMERICAN JOURNAL OF HUMAN GENETICS, 1999, 64 (04) :1243-1246
[3]  
Benton A., 1989, MULTILINGUAL APHASIA
[4]  
Benton AL, 1955, CHILD DEV, V26, P225
[5]   EVALUATING STORAGE, RETENTION, AND RETRIEVAL IN DISORDERED MEMORY AND LEARNING [J].
BUSCHKE, H ;
FULD, PA .
NEUROLOGY, 1974, 24 (11) :1019-1025
[6]   Meta-analysis of linkage studies for Alzheimer's disease-A web resource [J].
Butler, Amy W. ;
Ng, Mandy Y. M. ;
Hamshere, Marian L. ;
Forabosco, Paola ;
Wroe, Richard ;
Al-Chalabi, Ammar ;
Lewis, Cathryn M. ;
Powell, John F. .
NEUROBIOLOGY OF AGING, 2009, 30 (07) :1037-1047
[7]   GENE DOSE OF APOLIPOPROTEIN-E TYPE-4 ALLELE AND THE RISK OF ALZHEIMERS-DISEASE IN LATE-ONSET FAMILIES [J].
CORDER, EH ;
SAUNDERS, AM ;
STRITTMATTER, WJ ;
SCHMECHEL, DE ;
GASKELL, PC ;
SMALL, GW ;
ROSES, AD ;
HAINES, JL ;
PERICAKVANCE, MA .
SCIENCE, 1993, 261 (5123) :921-923
[8]   Rare coding variants in the phospholipase D3 gene confer risk for Alzheimer's disease [J].
Cruchaga, Carlos ;
Karch, Celeste M. ;
Jin, Sheng Chih ;
Benitez, Bruno A. ;
Cai, Yefei ;
Guerreiro, Rita ;
Harari, Oscar ;
Norton, Joanne ;
Budde, John ;
Bertelsen, Sarah ;
Jeng, Amanda T. ;
Cooper, Breanna ;
Skorupa, Tara ;
Carrell, David ;
Levitch, Denise ;
Hsu, Simon ;
Choi, Jiyoon ;
Ryten, Mina ;
Sassi, Celeste ;
Bras, Jose ;
Gibbs, J. Raphael ;
Hernandez, Dena G. ;
Lupton, Michelle K. ;
Powell, John ;
Forabosco, Paola ;
Ridge, Perry G. ;
Corcoran, Christopher D. ;
Tschanz, Joann T. ;
Norton, Maria C. ;
Munger, Ronald G. ;
Schmutz, Cameron ;
Leary, Maegan ;
Demirci, F. Yesim ;
Bamne, Mikhil N. ;
Wang, Xingbin ;
Lopez, Oscar L. ;
Ganguli, Mary ;
Medway, Christopher ;
Turton, James ;
Lord, Jenny ;
Braae, Anne ;
Barber, Imelda ;
Brown, Kristelle ;
Pastor, Pau ;
Lorenzo-Betancor, Oswaldo ;
Brkanac, Zoran ;
Scott, Erick ;
Topol, Eric ;
Morgan, Kevin ;
Rogaeva, Ekaterina .
NATURE, 2014, 505 (7484) :550-+
[9]  
D'Elia L.F., 1994, COLOR TRAILS TEST PR
[10]   Hypermethylation in the ZBTB20 gene is associated with major depressive disorder [J].
Davies, Matthew N. ;
Krause, Lutz ;
Bell, Jordana T. ;
Gao, Fei ;
Ward, Kirsten J. ;
Wu, Honglong ;
Lu, Hanlin ;
Liu, Yuan ;
Tsai, Pei-Chein ;
Collier, David A. ;
Murphy, Therese ;
Dempster, Emma ;
Mill, Jonathan ;
Battle, Alexis ;
Mostafavi, Sara ;
Zhu, Xiaowei ;
Henders, Anjali ;
Byrne, Enda ;
Wray, Naomi R. ;
Martin, Nicholas G. ;
Spector, Tim D. ;
Wang, Jun .
GENOME BIOLOGY, 2014, 15 (04)