Identification of non-histone substrates for JMJD2A-C histone demethylases

被引:44
作者
Ponnaluri, V. K. Chaithanya [1 ]
Vavilala, Divya Teja [1 ]
Putty, Sandeep [1 ]
Gutheil, William G. [1 ]
Mukherji, Mridul [1 ]
机构
[1] Univ Missouri, Div Pharmaceut Sci, Sch Pharm, Kansas City, MO 64108 USA
关键词
Epigenetics; Demethylase; Dioxygenase; Enzyme assay; Transcription regulation; Jumonji domain; HYPOXIA-INDUCIBLE FACTOR; ANDROGEN RECEPTOR; HYDROXYLATION; PROTEINS; LYSINE-9; DOMAIN; CTBP; LSD1; H3;
D O I
10.1016/j.bbrc.2009.09.107
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Recent studies have shown that some Jumonji domain containing proteins demethylate tri- and dimethylated histone lysines by catalyzing a dioxygenase reaction. Here we report the substrate specificity of Jumonji domain-2 family histone demethylases (JMJD2A-C). A candidate substrate-based approach demonstrated that in addition to its known substrate, tri-methylated histone H3-lysine-9, JMJD2A-C demethylate trimethylated lysine containing peptides from WIZ, CDYL1, CSB and G9a proteins, all constituents of transcription repression complexes. Our results are consistent with lax substrate specificities observed for the iron (11), 2-oxoglutarate-dependent dioxygenases, and shed new light on signaling pathways regulated by Jumonji domain-2 family histone demethylases during epigenetic transcriptional regulation. (C) 2009 Elsevier Inc. All rights reserved.
引用
收藏
页码:280 / 284
页数:5
相关论文
共 16 条
[1]   The putative oncogene GASC1 demethylates tri- and dimethylated lysine 9 on histone H3 [J].
Cloos, Paul A. C. ;
Christensen, Jesper ;
Agger, Karl ;
Maiolica, Alessio ;
Rappsilber, Juri ;
Antal, Torben ;
Hansen, Klaus H. ;
Helin, Kristian .
NATURE, 2006, 442 (7100) :307-311
[2]   Posttranslational hydroxylation of ankyrin repeats in IκB proteins by the hypoxia-inducible factor (HIF) asparaginyl hydroxylase, factor inhibiting HIF (FIH) [J].
Cockman, Matthew E. ;
Lancaster, David E. ;
Stolze, Ineke P. ;
Hewitson, Kirsty S. ;
McDonough, Michael A. ;
Coleman, Mathew L. ;
Coles, Charlotte H. ;
Yu, Xiaohong ;
Hay, Ronald T. ;
Ley, Steven C. ;
Pugh, Christopher W. ;
Oldham, Neil J. ;
Masson, Norma ;
Schofield, Christopher J. ;
Ratcliffe, Peter J. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (40) :14767-14772
[3]   Asparaginyl hydroxylation of the notch ankyrin repeat domain by factor inhibiting hypoxia-inducible factor [J].
Coleman, Mathew L. ;
McDonough, Michael A. ;
Hewitson, Kirsty S. ;
Coles, Charlotte ;
Mecinovic, Jasmin ;
Edelmann, Mariola ;
Cook, Kristina M. ;
Cockman, Matthew E. ;
Lancaster, David E. ;
Kessler, Benedikt M. ;
Oldham, Neil J. ;
Ratcliffe, Peter J. ;
Schofield, Christopher J. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2007, 282 (33) :24027-24038
[4]   JmjC-domain-containing proteins and histone demethylation [J].
Klose, Robert J. ;
Kallin, Eric M. ;
Zhang, Yi .
NATURE REVIEWS GENETICS, 2006, 7 (09) :715-727
[5]   The transcriptional repressor JHDM3A demethylates trimethyl histone H3 lysine 9 and lysine 36 [J].
Klose, Robert J. ;
Yamane, Kenichi ;
Bae, Yangjin ;
Zhang, Dianzheng ;
Erdjument-Bromage, Hediye ;
Tempst, Paul ;
Wong, Jiemin ;
Zhang, Yi .
NATURE, 2006, 442 (7100) :312-316
[6]   Chromatin modifications and their function [J].
Kouzarides, Tony .
CELL, 2007, 128 (04) :693-705
[7]   Utilization of sterol carrier protein-2 by phytanoyl-CoA 2-hydroxylase in the peroxisomal α oxidation of phytanic acid [J].
Mukherji, M ;
Kershaw, NJ ;
Schofield, CJ ;
Wierzbicki, AS ;
Lloyd, MD .
CHEMISTRY & BIOLOGY, 2002, 9 (05) :597-605
[8]   Crystal structures of histone demethylase JMJD2A reveal basis for substrate specificity [J].
Ng, Stanley S. ;
Kavanagh, Kathryn L. ;
McDonough, Michael A. ;
Butler, Danica ;
Pilka, Ewa S. ;
Lienard, Benoit M. R. ;
Bray, James E. ;
Savitsky, Pavel ;
Gileadi, Opher ;
von Delft, Frank ;
Rose, Nathan R. ;
Offer, John ;
Scheinost, Johanna C. ;
Borowski, Tomasz ;
Sundstrom, Michael ;
Schofield, Christopher J. ;
Oppermann, Udo .
NATURE, 2007, 448 (7149) :87-91
[9]   Protein lysine methyltransferase G9a acts on non-histone targets [J].
Rathert, Philipp ;
Dhayalan, Arunkumar ;
Murakami, Marie ;
Zhang, Xing ;
Tamas, Raluca ;
Jurkowska, Renata ;
Komatsu, Yasuhiko ;
Shinkai, Yoichi ;
Cheng, Xiaodong ;
Jeltsch, Albert .
NATURE CHEMICAL BIOLOGY, 2008, 4 (06) :344-346
[10]   Histone demethylation mediated by the nuclear arnine oxidase homolog LSD1 [J].
Shi, YJ ;
Lan, F ;
Matson, C ;
Mulligan, P ;
Whetstine, JR ;
Cole, PA ;
Casero, RA ;
Shi, Y .
CELL, 2004, 119 (07) :941-953