Ultrafast dynamics of protein collapse from single-molecule photon statistics

被引:293
作者
Nettels, Daniel
Gopich, Irina V.
Hoffmann, Armin
Schuler, Benjamin
机构
[1] Univ Zurich, Inst Biochem, CH-8057 Zurich, Switzerland
[2] NIDDK, Phys Chem Lab, NIH, Bethesda, MD 20892 USA
关键词
correlation; fluorescence; Hanbury Brown and Twiss; photon bunching; protein folding;
D O I
10.1073/pnas.0611093104
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We use the statistics of photon emission from single molecules to probe the ultrafast dynamics of an unfolded protein via Forster resonance energy transfer. Global reconfiguration of the chain occurs on a time scale of approximate to 50 ns and slows down concomitant with chain collapse under folding conditions. These diffusive dynamics provide a missing link between the phenomenological chemical kinetics commonly used in protein folding and a physical description in terms of quantitative free energy surfaces. The experiments demonstrate the potential of single-molecule methods in accessing the biologically important nanosecond time scales even in heterogeneous populations.
引用
收藏
页码:2655 / 2660
页数:6
相关论文
共 73 条
[1]  
[Anonymous], 1987, Introduction to Modern Statistical Mechanics
[2]   A surprising simplicity to protein folding [J].
Baker, D .
NATURE, 2000, 405 (6782) :39-42
[3]   Photon statistics and dynamics of fluorescence resonance energy transfer [J].
Berglund, AJ ;
Doherty, AC ;
Mabuchi, H .
PHYSICAL REVIEW LETTERS, 2002, 89 (06) :1-068101
[4]   Diffusive model of protein folding dynamics with Kramers turnover in rate [J].
Best, RB ;
Hummer, G .
PHYSICAL REVIEW LETTERS, 2006, 96 (22)
[5]   The speed limit for protein folding measured by triplet-triplet energy transfer [J].
Bieri, O ;
Wirz, J ;
Hellrung, B ;
Schutkowski, M ;
Drewello, M ;
Kiefhaber, T .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (17) :9597-9601
[6]   EXCITATION TRANSFER IN THE CORE LIGHT-HARVESTING COMPLEX (LH-1) OF RHODOBACTER-SPHAEROIDES - AN ULTRAFAST FLUORESCENCE DEPOLARIZATION AND ANNIHILATION STUDY [J].
BRADFORTH, SE ;
JIMENEZ, R ;
VANMOURIK, F ;
VANGRONDELLE, R ;
FLEMING, GR .
JOURNAL OF PHYSICAL CHEMISTRY, 1995, 99 (43) :16179-16191
[7]   CORRELATION BETWEEN PHOTONS IN 2 COHERENT BEAMS OF LIGHT [J].
BROWN, RH ;
TWISS, RQ .
NATURE, 1956, 177 (4497) :27-29
[8]   FUNNELS, PATHWAYS, AND THE ENERGY LANDSCAPE OF PROTEIN-FOLDING - A SYNTHESIS [J].
BRYNGELSON, JD ;
ONUCHIC, JN ;
SOCCI, ND ;
WOLYNES, PG .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1995, 21 (03) :167-195
[9]   INTERMEDIATES AND BARRIER CROSSING IN A RANDOM ENERGY-MODEL (WITH APPLICATIONS TO PROTEIN FOLDING) [J].
BRYNGELSON, JD ;
WOLYNES, PG .
JOURNAL OF PHYSICAL CHEMISTRY, 1989, 93 (19) :6902-6915
[10]  
Buscaglia M, 2006, BIOPHYS J, V91, P276, DOI [10.1529/biophysj.105.071167, 10.1529/biophysj.105.0711667]