Accelerating the annotation of sparse named entities by dynamic sentence selection

被引:7
作者
Tsuruoka, Yoshimasa [1 ,2 ]
Tsujii, Jun'ichi [1 ,2 ,3 ]
Ananiadou, Sophia [1 ,2 ]
机构
[1] Univ Manchester, Sch Comp Sci, MIB, Manchester M1 7DN, Lancs, England
[2] MIB, Natl Ctr Text Min NaCTeM, Manchester M1 7DN, Lancs, England
[3] Univ Tokyo, Dept Comp Sci, Bunkyo Ku, Tokyo, Japan
基金
英国生物技术与生命科学研究理事会;
关键词
Conditional Random Field; Annotation Process; Target Category; Entity Recognition; Annotate Corpus;
D O I
10.1186/1471-2105-9-S11-S8
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Background: Previous studies of named entity recognition have shown that a reasonable level of recognition accuracy can be achieved by using machine learning models such as conditional random fields or support vector machines. However, the lack of training data (i.e. annotated corpora) makes it difficult for machine learning-based named entity recognizers to be used in building practical information extraction systems. Results: This paper presents an active learning-like framework for reducing the human effort required to create named entity annotations in a corpus. In this framework, the annotation work is performed as an iterative and interactive process between the human annotator and a probabilistic named entity tagger. Unlike active learning, our framework aims to annotate all occurrences of the target named entities in the given corpus, so that the resulting annotations are free from the sampling bias which is inevitable in active learning approaches. Conclusion: We evaluate our framework by simulating the annotation process using two named entity corpora and show that our approach can reduce the number of sentences which need to be examined by the human annotator. The cost reduction achieved by the framework could be drastic when the target named entities are sparse.
引用
收藏
页数:10
相关论文
共 20 条
  • [1] Culotta A., 2005, AAAI, V5, P746
  • [2] Dagan I., 1995, P 12 INT C MACH LEAR, P150, DOI [DOI 10.1016/B978-1-55860-377-6.50027-X, 10.1016/B978-1-55860-377-6.50027-X]
  • [3] Engelson S., 1996, P 34 ANN M ASS COMP, P319
  • [4] Globerson Amir, 2007, P 24 INT C MACH LEAR, P305, DOI [10.1145/1273496.1273535, DOI 10.1145/1273496.1273535]
  • [5] GENIA corpus-a semantically annotated corpus for bio-textmining
    Kim, J-D
    Ohta, T.
    Tateisi, Y.
    Tsujii, J.
    [J]. BIOINFORMATICS, 2003, 19 : i180 - i182
  • [6] Kim J-D, 2004, P INT JOINT WORKSHOP, P70
  • [7] Kulick Seth., 2004, PROC BIOLINK 2004, P61
  • [8] Lafferty J., 2001, PROC 18 INT C MACHIN, DOI [DOI 10.1038/NPROT.2006.61, 10.1038/nprot.2006.61]
  • [9] Gene name identification and normalization using a model organism database
    Morgan, AA
    Hirschman, L
    Colosimo, M
    Yeh, AS
    Colombe, JB
    [J]. JOURNAL OF BIOMEDICAL INFORMATICS, 2004, 37 (06) : 396 - 410
  • [10] NOCEDAL J, 1980, MATH COMPUT, V35, P773, DOI 10.1090/S0025-5718-1980-0572855-7