共 192 条
Interactions between Diatoms and Bacteria
被引:708
作者:

Amin, Shady A.
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h-index: 0
机构:
Univ Washington, Sch Oceanog, Seattle, WA 98195 USA Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Parker, Micaela S.
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h-index: 0
机构:
Univ Washington, Sch Oceanog, Seattle, WA 98195 USA Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Armbrust, E. Virginia
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h-index: 0
机构:
Univ Washington, Sch Oceanog, Seattle, WA 98195 USA Univ Washington, Sch Oceanog, Seattle, WA 98195 USA
机构:
[1] Univ Washington, Sch Oceanog, Seattle, WA 98195 USA
基金:
美国国家科学基金会;
关键词:
PSEUDO-NITZSCHIA-MULTISERIES;
ACYL-HOMOSERINE LACTONE;
TRANSPARENT EXOPOLYMER PARTICLES;
DOMOIC-ACID;
MARINE-BACTERIA;
NUTRIENT-UPTAKE;
IRON TRANSPORT;
SP NOV;
EXTRACELLULAR PROTEASE;
COMMUNITY COMPOSITION;
D O I:
10.1128/MMBR.00007-12
中图分类号:
Q93 [微生物学];
学科分类号:
071005 ;
100705 ;
摘要:
Diatoms and bacteria have cooccurred in common habitats for hundreds of millions of years, thus fostering specific associations and interactions with global biogeochemical consequences. Diatoms are responsible for one-fifth of the photosynthesis on Earth, while bacteria remineralize a large portion of this fixed carbon in the oceans. Through their coexistence, diatoms and bacteria cycle nutrients between oxidized and reduced states, impacting bioavailability and ultimately feeding higher trophic levels. Here we present an overview of how diatoms and bacteria interact and the implications of these interactions. We emphasize that heterotrophic bacteria in the oceans that are consistently associated with diatoms are confined to two phyla. These consistent bacterial associations result from encounter mechanisms that occur within a microscale environment surrounding a diatom cell. We review signaling mechanisms that occur in this microenvironment to pave the way for specific interactions. Finally, we discuss known interactions between diatoms and bacteria and exciting new directions and research opportunities in this field. Throughout the review, we emphasize new technological advances that will help in the discovery of new interactions. Deciphering the languages of diatoms and bacteria and how they interact will inform our understanding of the role these organisms have in shaping the ocean and how these interactions may change in future oceans.
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页码:667 / +
页数:19
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共 192 条
[1]
Petrobactin-mediated iron transport in pathogenic bacteria: Coordination chemistry of an unusual 3,4-catecholate/citrate siderophore
[J].
Abergel, Rebecca J.
;
Zawadzka, Anna M.
;
Raymond, Kenneth N.
.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
2008, 130 (07)
:2124-+

Abergel, Rebecca J.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA

Zawadzka, Anna M.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA

Raymond, Kenneth N.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA
[2]
Evolution and metabolic significance of the urea cycle in photosynthetic diatoms
[J].
Allen, Andrew E.
;
Dupont, Christopher L.
;
Obornik, Miroslav
;
Horak, Ales
;
Nunes-Nesi, Adriano
;
McCrow, John P.
;
Zheng, Hong
;
Johnson, Daniel A.
;
Hu, Hanhua
;
Fernie, Alisdair R.
;
Bowler, Chris
.
NATURE,
2011, 473 (7346)
:203-+

Allen, Andrew E.
论文数: 0 引用数: 0
h-index: 0
机构:
J Craig Venter Inst, San Diego, CA 92121 USA
Ecole Normale Super, Inst Biol, Environm & Evolutionary Genom Sect, CNRS,UMR8197,INSERM,U1024, F-75005 Paris, France J Craig Venter Inst, San Diego, CA 92121 USA

Dupont, Christopher L.
论文数: 0 引用数: 0
h-index: 0
机构:
J Craig Venter Inst, San Diego, CA 92121 USA J Craig Venter Inst, San Diego, CA 92121 USA

Obornik, Miroslav
论文数: 0 引用数: 0
h-index: 0
机构:
Biol Ctr ASCR, Inst Parasitol, Ceske Budejovice 37005, Czech Republic
Univ S Bohemia, Fac Sci, Ceske Budejovice 37005, Czech Republic J Craig Venter Inst, San Diego, CA 92121 USA

Horak, Ales
论文数: 0 引用数: 0
h-index: 0
机构:
Biol Ctr ASCR, Inst Parasitol, Ceske Budejovice 37005, Czech Republic
Univ S Bohemia, Fac Sci, Ceske Budejovice 37005, Czech Republic J Craig Venter Inst, San Diego, CA 92121 USA

Nunes-Nesi, Adriano
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Insitut Mol Pfanzenphysiol, D-14476 Potsdam, Germany J Craig Venter Inst, San Diego, CA 92121 USA

McCrow, John P.
论文数: 0 引用数: 0
h-index: 0
机构:
J Craig Venter Inst, San Diego, CA 92121 USA J Craig Venter Inst, San Diego, CA 92121 USA

Zheng, Hong
论文数: 0 引用数: 0
h-index: 0
机构:
J Craig Venter Inst, San Diego, CA 92121 USA J Craig Venter Inst, San Diego, CA 92121 USA

Johnson, Daniel A.
论文数: 0 引用数: 0
h-index: 0
机构:
J Craig Venter Inst, San Diego, CA 92121 USA J Craig Venter Inst, San Diego, CA 92121 USA

Hu, Hanhua
论文数: 0 引用数: 0
h-index: 0
机构:
Ecole Normale Super, Inst Biol, Environm & Evolutionary Genom Sect, CNRS,UMR8197,INSERM,U1024, F-75005 Paris, France J Craig Venter Inst, San Diego, CA 92121 USA

Fernie, Alisdair R.
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Insitut Mol Pfanzenphysiol, D-14476 Potsdam, Germany J Craig Venter Inst, San Diego, CA 92121 USA

Bowler, Chris
论文数: 0 引用数: 0
h-index: 0
机构:
Ecole Normale Super, Inst Biol, Environm & Evolutionary Genom Sect, CNRS,UMR8197,INSERM,U1024, F-75005 Paris, France J Craig Venter Inst, San Diego, CA 92121 USA
[3]
Boron binding by a siderophore isolated from marine bacteria associated with the toxic dinoflagellate Gymnodinium catenatum
[J].
Amin, Shady A.
;
Kupper, Frithjof C.
;
Green, David H.
;
Harris, Wesley R.
;
Carrano, Carl J.
.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
2007, 129 (03)
:478-479

Amin, Shady A.
论文数: 0 引用数: 0
h-index: 0
机构: San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA

Kupper, Frithjof C.
论文数: 0 引用数: 0
h-index: 0
机构: San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA

Green, David H.
论文数: 0 引用数: 0
h-index: 0
机构: San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA

Harris, Wesley R.
论文数: 0 引用数: 0
h-index: 0
机构: San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA

Carrano, Carl J.
论文数: 0 引用数: 0
h-index: 0
机构:
San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA
[4]
Iron transport in the genus Marinobacter
[J].
Amin, Shady A.
;
Green, David H.
;
Al Waheeb, Dhuha
;
Gaerdes, Astrid
;
Carrano, Carl J.
.
BIOMETALS,
2012, 25 (01)
:135-147

Amin, Shady A.
论文数: 0 引用数: 0
h-index: 0
机构:
San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA

Green, David H.
论文数: 0 引用数: 0
h-index: 0
机构:
Scottish Assoc Marine Sci, Dunstaffnage Marine Lab, Oban PA37 1QA, Argyll, Scotland San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA

Al Waheeb, Dhuha
论文数: 0 引用数: 0
h-index: 0
机构:
San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA

Gaerdes, Astrid
论文数: 0 引用数: 0
h-index: 0
机构:
San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA

Carrano, Carl J.
论文数: 0 引用数: 0
h-index: 0
机构:
San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA
[5]
Photolysis of iron-siderophore chelates promotes bacterial-algal mutualism
[J].
Amin, Shady A.
;
Green, David H.
;
Hart, Mark C.
;
Kuepper, Frithjof C.
;
Sunda, William G.
;
Carrano, Carl J.
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2009, 106 (40)
:17071-17076

Amin, Shady A.
论文数: 0 引用数: 0
h-index: 0
机构:
San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA

Green, David H.
论文数: 0 引用数: 0
h-index: 0
机构:
Dunstaffnage Marine Res Lab, Scottish Assoc Marine Sci, Oban PA37 1QA, Argyll, Scotland San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA

Hart, Mark C.
论文数: 0 引用数: 0
h-index: 0
机构:
Dunstaffnage Marine Res Lab, Scottish Assoc Marine Sci, Oban PA37 1QA, Argyll, Scotland San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA

Kuepper, Frithjof C.
论文数: 0 引用数: 0
h-index: 0
机构:
Dunstaffnage Marine Res Lab, Scottish Assoc Marine Sci, Oban PA37 1QA, Argyll, Scotland San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA

Sunda, William G.
论文数: 0 引用数: 0
h-index: 0
机构:
NOAA, Beaufort Lab, Beaufort, NC 28516 USA San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA

Carrano, Carl J.
论文数: 0 引用数: 0
h-index: 0
机构:
San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA San Diego State Univ, Dept Chem & Biochem, San Diego, CA 92182 USA
[6]
Phylogeny of the family Halomonadaceae based on 23S and 16S rDNA sequence analyses
[J].
Arahal, DR
;
Ludwig, W
;
Schleifer, KH
;
Ventosa, A
.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,
2002, 52
:241-249

Arahal, DR
论文数: 0 引用数: 0
h-index: 0
机构: Univ Sevilla, Fac Farm, Dept Microbiol & Parasitol, E-41012 Seville, Spain

Ludwig, W
论文数: 0 引用数: 0
h-index: 0
机构: Univ Sevilla, Fac Farm, Dept Microbiol & Parasitol, E-41012 Seville, Spain

Schleifer, KH
论文数: 0 引用数: 0
h-index: 0
机构: Univ Sevilla, Fac Farm, Dept Microbiol & Parasitol, E-41012 Seville, Spain

Ventosa, A
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Sevilla, Fac Farm, Dept Microbiol & Parasitol, E-41012 Seville, Spain Univ Sevilla, Fac Farm, Dept Microbiol & Parasitol, E-41012 Seville, Spain
[7]
The life of diatoms in the world's oceans
[J].
Armbrust, E. Virginia
.
NATURE,
2009, 459 (7244)
:185-192

Armbrust, E. Virginia
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Washington, Sch Oceanog, Seattle, WA 98195 USA Univ Washington, Sch Oceanog, Seattle, WA 98195 USA
[8]
The genome of the diatom Thalassiosira pseudonana:: Ecology, evolution, and metabolism
[J].
Armbrust, EV
;
Berges, JA
;
Bowler, C
;
Green, BR
;
Martinez, D
;
Putnam, NH
;
Zhou, SG
;
Allen, AE
;
Apt, KE
;
Bechner, M
;
Brzezinski, MA
;
Chaal, BK
;
Chiovitti, A
;
Davis, AK
;
Demarest, MS
;
Detter, JC
;
Glavina, T
;
Goodstein, D
;
Hadi, MZ
;
Hellsten, U
;
Hildebrand, M
;
Jenkins, BD
;
Jurka, J
;
Kapitonov, VV
;
Kröger, N
;
Lau, WWY
;
Lane, TW
;
Larimer, FW
;
Lippmeier, JC
;
Lucas, S
;
Medina, M
;
Montsant, A
;
Obornik, M
;
Parker, MS
;
Palenik, B
;
Pazour, GJ
;
Richardson, PM
;
Rynearson, TA
;
Saito, MA
;
Schwartz, DC
;
Thamatrakoln, K
;
Valentin, K
;
Vardi, A
;
Wilkerson, FP
;
Rokhsar, DS
.
SCIENCE,
2004, 306 (5693)
:79-86

Armbrust, EV
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Washington, Sch Oceanog, Seattle, WA 98195 USA Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Berges, JA
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Bowler, C
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Green, BR
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Martinez, D
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Putnam, NH
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Zhou, SG
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Allen, AE
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Apt, KE
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Bechner, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Brzezinski, MA
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Chaal, BK
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Chiovitti, A
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Davis, AK
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Demarest, MS
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Detter, JC
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Glavina, T
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Goodstein, D
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Hadi, MZ
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Hellsten, U
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Hildebrand, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Jenkins, BD
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Jurka, J
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Kapitonov, VV
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Kröger, N
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Lau, WWY
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Lane, TW
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Larimer, FW
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Lippmeier, JC
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Lucas, S
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Medina, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Montsant, A
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Obornik, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Parker, MS
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Palenik, B
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Pazour, GJ
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Richardson, PM
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Rynearson, TA
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Saito, MA
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Schwartz, DC
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Thamatrakoln, K
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Valentin, K
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Vardi, A
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Wilkerson, FP
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA

Rokhsar, DS
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Sch Oceanog, Seattle, WA 98195 USA
[9]
Nutrient uptake rate as a function of cell size and surface transporter density: A Michaelis-like approximation to the model of Pasciak and Gavis
[J].
Armstrong, Robert A.
.
DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS,
2008, 55 (10)
:1311-1317

Armstrong, Robert A.
论文数: 0 引用数: 0
h-index: 0
机构:
SUNY Stony Brook, Marine Sci Res Ctr, Stony Brook, NY 11794 USA SUNY Stony Brook, Marine Sci Res Ctr, Stony Brook, NY 11794 USA
[10]
Zeaxanthinibacter enoshimensis gen. nov., sp nov., a novel zeaxanthin-producing marine bacterium of the family Flavobacteriaceae, isolated from seawater off Enoshima Island, Japan
[J].
Asker, Dalal
;
Beppu, Teruhiko
;
Ueda, Kenji
.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,
2007, 57
:837-843

Asker, Dalal
论文数: 0 引用数: 0
h-index: 0
机构:
Nihon Univ, Life Sci Res Ctr, Coll Bioresource Sci, Fujisawa, Kanagawa 2528510, Japan Nihon Univ, Life Sci Res Ctr, Coll Bioresource Sci, Fujisawa, Kanagawa 2528510, Japan

Beppu, Teruhiko
论文数: 0 引用数: 0
h-index: 0
机构:
Nihon Univ, Life Sci Res Ctr, Coll Bioresource Sci, Fujisawa, Kanagawa 2528510, Japan Nihon Univ, Life Sci Res Ctr, Coll Bioresource Sci, Fujisawa, Kanagawa 2528510, Japan

Ueda, Kenji
论文数: 0 引用数: 0
h-index: 0
机构:
Nihon Univ, Life Sci Res Ctr, Coll Bioresource Sci, Fujisawa, Kanagawa 2528510, Japan Nihon Univ, Life Sci Res Ctr, Coll Bioresource Sci, Fujisawa, Kanagawa 2528510, Japan