A highly efficient method for long-chain cDNA synthesis using trehalose and betaine

被引:50
作者
Spiess, AN [1 ]
Ivell, R [1 ]
机构
[1] Inst Hormone & Fertil Res, D-22529 Hamburg, Germany
关键词
cDNA synthesis; secondary structure; melting temperature; thermostabilization;
D O I
10.1006/abio.2001.5474
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Obtaining full-length cDNA is important for many molecular biology methods like cDNA library construction or RACE-PCR (rapid amplification of cDNA ends). We have found that the inclusion of betaine alone and in combination with trehalose in reverse transcription results in longer cDNA synthesis products. As shown on the 14-kb long clathhrin mRNA with real-time PCR, a combination of 2 M betaine and 0.6 M trehalose leads to almost 9 times more cDNA with a length of 12.5 kb. This is due to the ability of betaine to resolve secondary structures of the RNA, thereby decreasing its melting temperature. The application of betaine in combination with trehalose should prove useful in all laboratory methods relying on full-length cDNA. (C) 2002 Elsevier Science (USA).
引用
收藏
页码:168 / 174
页数:7
相关论文
共 22 条
[1]  
ABBOTTS J, 1993, J BIOL CHEM, V268, P10312
[2]   Uniform amplification of a mixture of deoxyribonucleic acids with varying GC content [J].
Baskaran, N ;
Kandpal, RP ;
Bhargava, AK ;
Glynn, MW ;
Bale, A ;
Weissman, SM .
GENOME RESEARCH, 1996, 6 (07) :633-638
[3]  
Boncompagni E, 1999, APPL ENVIRON MICROB, V65, P2072
[4]  
BROOKS EM, 1995, BIOTECHNIQUES, V19, P806
[5]   Effects of protein stabilizing agents on thermal backbone motions: A disulfide trapping study [J].
Butler, SL ;
Falke, JJ .
BIOCHEMISTRY, 1996, 35 (33) :10595-10600
[6]   Thermostabilization and thermoactivation of thermolabile enzymes by trehalose and its application for the synthesis of full length cDNA [J].
Carninci, P ;
Nishiyama, Y ;
Westover, A ;
Itoh, M ;
Nagaoka, S ;
Sasaki, N ;
Okazaki, Y ;
Muramatsu, M ;
Hayashizaki, Y .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (02) :520-524
[7]   GLYCINE BETAINE UPTAKE AFTER HYPEROSMOTIC SHIFT IN CORYNEBACTERIUM-GLUTAMICUM [J].
FARWICK, M ;
SIEWE, RM ;
KRAMER, R .
JOURNAL OF BACTERIOLOGY, 1995, 177 (16) :4690-4695
[8]  
HACKER KJ, 1994, J BIOL CHEM, V269, P24221
[9]   Betaine improves the PCR amplification of GC-rich DNA sequences [J].
Henke, W ;
Herdel, K ;
Jung, K ;
Schnorr, D ;
Loening, SA .
NUCLEIC ACIDS RESEARCH, 1997, 25 (19) :3957-3958
[10]   Molecular biology of the oxytocin receptor: a comparative approach [J].
Ivell, R ;
Bathgate, R ;
Kimura, T ;
Parry, L .
BIOCHEMICAL SOCIETY TRANSACTIONS, 1997, 25 (03) :1058-1066