Extensive deuterium back-exchange in certain immobilized pepsin columns used for H/D exchange mass spectrometry

被引:35
作者
Wu, Y [1 ]
Kaveti, S [1 ]
Engen, JR [1 ]
机构
[1] Univ New Mexico, Dept Chem, Albuquerque, NM 87131 USA
关键词
D O I
10.1021/ac0518497
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
Pepsin digestion prior to mass analysis increases the spatial resolution of hydrogen exchange mass spectrometry experiments. Online digestion with immobilized pepsin is advantageous for several reasons including better digestion efficiency. We have found that certain immobilized pepsin columns cause substantial deuterium back-exchange, rendering the data unusable. When pepsin immobilized on a POROS support was used for online digestion, back-exchange was within the expected range and was similar to the back-exchange of deuterated peptides produced by in-solution pepsin digestion. However, when pepsin immobilized onto selected polystyrene-divinylbenzene supports was used for online digestion with the same system, deuterium loss was extremely high. The effect seems linked to the properties of the solid support used to conjugate the pepsin.
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收藏
页码:1719 / 1723
页数:5
相关论文
共 17 条
[1]   Use of different proteases working in acidic conditions to improve sequence coverage and resolution in hydrogen/deuterium exchange of large proteins [J].
Cravello, L ;
Lascoux, D ;
Forest, E .
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 2003, 17 (21) :2387-2393
[2]   Mass spectrometric determination of isotopic exchange rates of amide hydrogens located on the surfaces of proteins [J].
Dharmasiri, K ;
Smith, DL .
ANALYTICAL CHEMISTRY, 1996, 68 (14) :2340-2344
[3]  
Engen Jr, 2000, METH MOL B, V146, P95, DOI 10.1385/1-59259-045-4:95
[4]   HYDROGEN-EXCHANGE AND STRUCTURAL DYNAMICS OF PROTEINS AND NUCLEIC-ACIDS [J].
ENGLANDER, SW ;
KALLENBACH, NR .
QUARTERLY REVIEWS OF BIOPHYSICS, 1983, 16 (04) :521-655
[5]   Methods to study protein dynamics and folding by mass spectrometry [J].
Eyles, SJ ;
Kaltashov, IA .
METHODS, 2004, 34 (01) :88-99
[6]   Protein analysis by hydrogen exchange mass spectrometry [J].
Hoofnagle, AN ;
Resing, KA ;
Ahn, NG .
ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE, 2003, 32 :1-25
[7]   In vitro refolding of porcine pepsin immobilized on agarose beads [J].
Kurimoto, E ;
Harada, T ;
Akiyama, A ;
Sakai, T ;
Kato, K .
JOURNAL OF BIOCHEMISTRY, 2001, 130 (02) :295-297
[8]   Analysis of subsecond protein dynamics by amide hydrogen exchange and mass spectrometry using a quenched-flow setup [J].
Rist, W ;
Rodriguez, F ;
Jorgensen, TJD ;
Mayer, MP .
PROTEIN SCIENCE, 2005, 14 (03) :626-632
[9]   Mapping temperature-induced conformational changes in the Escherichia coli heat shock transcription factor σ32 by amide hydrogen exchange [J].
Rist, W ;
Jorgensen, TJD ;
Roepstorff, P ;
Bukau, B ;
Mayer, MP .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (51) :51415-51421
[10]   EXPERIMENTAL PROCEDURE FOR INCREASING THE STRUCTURAL RESOLUTION OF CHEMICAL HYDROGEN-EXCHANGE MEASUREMENTS ON PROTEINS - APPLICATION TO RIBONUCLEASE S-PEPTIDE [J].
ROSA, JJ ;
RICHARDS, FM .
JOURNAL OF MOLECULAR BIOLOGY, 1979, 133 (03) :399-416