Biocatalyst activity in nonaqueous environments correlates with centisecond-range protein motions

被引:28
作者
Eppler, Ross K. [1 ]
Hudson, Elton P. [1 ]
Chase, Shannon D. [1 ]
Dordick, Jonathan S. [2 ]
Reimer, Jeffrey A. [1 ]
Clark, Douglas S. [1 ]
机构
[1] Univ Calif Berkeley, Dept Chem Engn, Berkeley, CA 94720 USA
[2] Rensselaer Polytech Inst, Dept Biol & Chem Engn, Troy, NY 12180 USA
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
enzyme activation; enzyme dynamics; NMR spectroscopy; organic solvents; subtilisin Carlsberg;
D O I
10.1073/pnas.0804566105
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 [理学]; 0710 [生物学]; 09 [农学];
摘要
Recent studies exploring the relationship between enzymatic catalysis and protein dynamics in the aqueous phase have yielded evidence that dynamics and enzyme activity are strongly correlated. Given that protein dynamics are significantly attenuated in organic solvents and that proteins exhibit a wide range of motions depending on the specific solvent environment, the nonaqueous milieu provides a unique opportunity to examine the role of protein dynamics in enzyme activity. Variable-temperature kinetic measurements, X-band electron spin resonance spectroscopy, H-1 NMR relaxation, and F-19 NMR spectroscopy experiments were performed on subtilisin Carlsberg colyophilized with several inorganic salts and suspended in organic solvents. The results indicate that salt activation induces a greater degree of transition-state flexibility, reflected by a more positive Delta Delta S+, for the more active biocatalyst preparations in organic solvents. In contrast, Delta Delta H+ was negligible regardless of salt type or salt content. Electron spin resonance spectroscopy and H-1 NMR relaxation measurements, including spin-lattice relaxation, spin-lattice relaxation in the rotating frame, and longitudinal magnetization exchange, revealed that the enzyme's turnover number (k(cat)) was strongly correlated with protein motions in the centisecond time regime, weakly correlated with protein motions in the millisecond regime, and uncorrelated with protein motions on the piconanosecond timescale. In addition, F-19 chemical shift measurements and hyperfine tensor measurements of biocatalyst formulations inhibited with 4-fluorobenzenesulfonyl fluoride and 4-ethoxyfluorophosphinyl-oxy-TEMPO, respectively, suggest that enzyme activation was only weakly affected by changes in active-site polarity.
引用
收藏
页码:15672 / 15677
页数:6
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