Physical mapping of the wheat genome: A coordinated effort to lay the foundation for genome sequencing and develop tools for breeders

被引:25
作者
Feuillet, Catherine [1 ]
Eversole, Kellye [2 ]
机构
[1] INRA, UBP, UMR Ameliorat & Sante Plantes 1095, F-63100 Clermont Ferrand, France
[2] Eversole Associates, Int Wheat Genome Sequencing Consortium, Bethesda, MD 20816 USA
关键词
wheat; physical mapping; sequencing; chromosome; 3B; international consortium;
D O I
10.1560/IJPS.55.3-4.307
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
The International Wheat Genome Sequencing Consortium (IWGSC) was launched in 2005 with the aim of developing the tools and resources for sequencing the hexaploid wheat genome and providing breeders with state-of-the-art tools for improving wheat. The mid-term goals are to develop a physical map of the 21 Chromosomes of bread wheat cv. Chinese Spring to accelerate map-based cloning and develop new markers, increase our knowledge about wheat genome organization, and assess Sequencing technologies. In this framework. the feasibility of constructing the physical map using a chromosome-based approach has been evaluated through the development of the physical map of chromosome 3B. This article provides an update on the different projects developed within the IWGSC to reach these goals as well as a progress report oil the construction of the 3B physical map.
引用
收藏
页码:307 / 313
页数:7
相关论文
共 18 条
[1]   Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project [J].
Birney, Ewan ;
Stamatoyannopoulos, John A. ;
Dutta, Anindya ;
Guigo, Roderic ;
Gingeras, Thomas R. ;
Margulies, Elliott H. ;
Weng, Zhiping ;
Snyder, Michael ;
Dermitzakis, Emmanouil T. ;
Stamatoyannopoulos, John A. ;
Thurman, Robert E. ;
Kuehn, Michael S. ;
Taylor, Christopher M. ;
Neph, Shane ;
Koch, Christoph M. ;
Asthana, Saurabh ;
Malhotra, Ankit ;
Adzhubei, Ivan ;
Greenbaum, Jason A. ;
Andrews, Robert M. ;
Flicek, Paul ;
Boyle, Patrick J. ;
Cao, Hua ;
Carter, Nigel P. ;
Clelland, Gayle K. ;
Davis, Sean ;
Day, Nathan ;
Dhami, Pawandeep ;
Dillon, Shane C. ;
Dorschner, Michael O. ;
Fiegler, Heike ;
Giresi, Paul G. ;
Goldy, Jeff ;
Hawrylycz, Michael ;
Haydock, Andrew ;
Humbert, Richard ;
James, Keith D. ;
Johnson, Brett E. ;
Johnson, Ericka M. ;
Frum, Tristan T. ;
Rosenzweig, Elizabeth R. ;
Karnani, Neerja ;
Lee, Kirsten ;
Lefebvre, Gregory C. ;
Navas, Patrick A. ;
Neri, Fidencio ;
Parker, Stephen C. J. ;
Sabo, Peter J. ;
Sandstrom, Richard ;
Shafer, Anthony .
NATURE, 2007, 447 (7146) :799-816
[2]   Efficient cloning of plant genomes into bacterial artificial chromosome (BAC) libraries with larger and more uniform insert size [J].
Chalhoub, B ;
Belcram, H ;
Caboche, M .
PLANT BIOTECHNOLOGY JOURNAL, 2004, 2 (03) :181-188
[3]  
Feldman M., 2001, The World Wheat Book: A History of Wheat Breeding, P3
[4]   Retrotransposon-based insertion polymorphisms (RBIP) for high throughput marker analysis [J].
Flavell, AJ ;
Knox, MR ;
Pearce, SR ;
Ellis, THN .
PLANT JOURNAL, 1998, 16 (05) :643-650
[5]   A Workshop Report on Wheat Genome Sequencing: International Genome Research on Wheat Consortium [J].
Gill, Bikram S. ;
Appels, Rudi ;
Botha-Oberholster, Anna-Maria ;
Buell, C. Robin ;
Bennetzen, Jeffrey L. ;
Chalhoub, Boulos ;
Chumley, Forrest ;
Dvorak, Jan ;
Iwanaga, Masaru ;
Keller, Beat ;
Li, Wanlong ;
McCombie, W. Richard ;
Ogihara, Yasunari ;
Quetier, Francis ;
Sasaki, Takuji .
GENETICS, 2004, 168 (02) :1087-1096
[6]   Cisgenesis strongly improves introgression breeding and induced translocation breeding of plants [J].
Jacobsen, Evert ;
Schouten, Henk J. .
TRENDS IN BIOTECHNOLOGY, 2007, 25 (05) :219-223
[7]   A high-throughput AFLP-based method for constructing integrated genetic and physical maps: Progress toward a sorghum genome map [J].
Klein, PE ;
Klein, RR ;
Cartinhour, SW ;
Ulanch, PE ;
Dong, JM ;
Obert, JA ;
Morishige, DT ;
Schlueter, SD ;
Childs, KL ;
Ale, M ;
Mullet, JE .
GENOME RESEARCH, 2000, 10 (06) :789-807
[8]   Flow karyotyping and chromosome sorting in bread wheat (Triticum aestivum L.) [J].
Kubaláková, M ;
Vrána, J ;
Cíhalíková, J ;
Simková, H ;
Dolezel, J .
THEORETICAL AND APPLIED GENETICS, 2002, 104 (08) :1362-1372
[9]   High-throughput fingerprinting of bacterial artificial chromosomes using the SNaPshot labeling kit and sizing of restriction fragments by capillary electrophoresis [J].
Luo, MC ;
Thomas, C ;
You, FM ;
Hsiao, J ;
Shu, OY ;
Buell, CR ;
Malandro, M ;
McGuire, PE ;
Anderson, OD ;
Dvorak, J .
GENOMICS, 2003, 82 (03) :378-389
[10]   Group 3 chromosome bin maps of wheat and their relationship to rice chromosome 1 [J].
Munkvold, JD ;
Greene, RA ;
Bertmudez-Kandianis, CE ;
La Rota, CM ;
Edwards, H ;
Sorrells, SF ;
Dake, T ;
Benscher, D ;
Kantety, R ;
Linkiewicz, AM ;
Dubcovsky, J ;
Akhunov, ED ;
Dvorák, J ;
Mifahudin ;
Gustafson, JP ;
Pathan, MS ;
Nguyen, HT ;
Matthews, DE ;
Chao, S ;
Lazo, GR ;
Hummel, DD ;
Anderson, OD ;
Anderson, JA ;
Gonzalez-Hernandez, JL ;
Peng, JH ;
Lapitan, N ;
Qi, LL ;
Echalier, B ;
Gill, BS ;
Hossain, KG ;
Kalavacharla, V ;
Kianian, SF ;
Sandhu, D ;
Erayman, M ;
Gill, KS ;
McGuire, PE ;
Qualset, CO ;
Sorrells, ME .
GENETICS, 2004, 168 (02) :639-650