What can we do to refine the redundant data in LC-MS and GC-MS based metabolomics?

被引：3

作者：

Chen, Jiaqing ^{[1
,2
]}

Xu, Fengguo ^{[1
,2
]}

机构：

[1] China Pharmaceut Univ, Key Lab Drug Qual Control & Pharmacovigilance, Nanjing 210009, Jiangsu, Peoples R China

[2] China Pharmaceut Univ, State Key Lab Nat Med, Nanjing 210009, Jiangsu, Peoples R China

来源：

BIOANALYSIS | 2017年 / 9卷 / 03期

关键词：

data refinement; metabolomics; MS; CHROMATOGRAPHY-MASS SPECTROMETRY; METABOLITE IDENTIFICATION; ACQUISITION; INFORMATION; DISCOVERY; STRATEGY; MS/MS; SWATH; MODE;

D O I：

10.4155/bio-2016-0272

中图分类号：

Q5 [生物化学];

学科分类号：

070307 [化学生物学];

摘要：

[No abstract available]

引用

页码：235 / 238

页数：4

共 18 条

[1]

Improvement of the quantitative differential metabolome pipeline for gas chromatography-mass spectrometry data by automated reliable peak selection [J].

Ara, Takeshi ;

Sakurai, Nozomu ;

Tange, Yoshie ;

Morishita, Yoshihiko ;

Suzuki, Hideyuki ;

Aoki, Koh ;

Saito, Kazuki ;

Shibata, Daisuke .

PLANT BIOTECHNOLOGY, 2009, 26 (05) :445-449

[2]

SWATH acquisition mode for drug metabolism and metabolomics investigations [J].

Bonner, Ron ;

Hopfgartner, Gerard .

BIOANALYSIS, 2016, 8 (16) :1735-1750

[3]

Pseudotargeted Metabolomics Method and Its Application in Serum Biomarker Discovery for Hepatocellular Carcinoma Based on Ultra High-Performance Liquid Chromatography/Triple Quadrupole Mass Spectrometry [J].

Chen, Shili ;

Kong, Hongwei ;

Lu, Xin ;

Li, Yong ;

Yin, Peiyuan ;

Zeng, Zhongda ;

Xu, Guowang .

ANALYTICAL CHEMISTRY, 2013, 85 (17) :8326-8333

[4]

Comparative evaluation of preprocessing freeware on chromatography/mass spectrometry data for signature discovery [J].

Coble, Jamie B. ;

Fraga, Carlos G. .

JOURNAL OF CHROMATOGRAPHY A, 2014, 1358 :155-164

[5]

Multiplexed MS/MS for improved data-independent acquisition [J].

Egertson, Jarrett D. ;

Kuehn, Andreas ;

Merrihew, Gennifer E. ;

Bateman, Nicholas W. ;

MacLean, Brendan X. ;

Ting, Ying S. ;

Canterbury, Jesse D. ;

Marsh, Donald M. ;

Kellmann, Markus ;

Zabrouskov, Vlad ;

Wu, Christine C. ;

MacCoss, Michael J. .

NATURE METHODS, 2013, 10 (08) :744-+

[6]

Peak Aggregation as an Innovative Strategy for Improving the Predictive Power of LC-MS Metabolomic Profiles [J].

Fernandez-Albert, Francesc ;

Llorach, Rafael ;

Andres-Lacueva, Cristina ;

Perera-Lluna, Alexandre .

ANALYTICAL CHEMISTRY, 2014, 86 (05) :2320-2325

[7]

Targeted Data-Independent Acquisition and Mining Strategy for Trace Drug Metabolite Identification Using Liquid Chromatography Coupled with Tandem Mass Spectrometry [J].

Gao, Yan ;

Zhang, Ruiping ;

Bai, Jinfa ;

Xia, Xuejun ;

Chen, Yanhua ;

Luo, Zhigang ;

Xu, Jing ;

Gao, Yang ;

Liu, Yuling ;

He, Jiuming ;

Abliz, Zeper .

ANALYTICAL CHEMISTRY, 2015, 87 (15) :7535-7539

[8]

Globally Optimized Targeted Mass Spectrometry: Reliable Metabolomics Analysis with Broad Coverage [J].

Gu, Haiwei ;

Zhang, Ping ;

Zhu, Jiangjiang ;

Raftery, Daniel .

ANALYTICAL CHEMISTRY, 2015, 87 (24) :12355-12362

[9]

Analytical pitfalls and challenges in clinical metabolomics [J].

Kohler, Isabelle ;

Verhoeven, Aswin ;

Derks, Rico J. E. ;

Giera, Martin .

BIOANALYSIS, 2016, 8 (14) :1509-1532

[10]

CAMERA: An Integrated Strategy for Compound Spectra Extraction and Annotation of Liquid Chromatography/Mass Spectrometry Data Sets [J].

Kuhl, Carsten ;

Tautenhahn, Ralf ;

Boettcher, Christoph ;

Larson, Tony R. ;

Neumann, Steffen .

ANALYTICAL CHEMISTRY, 2012, 84 (01) :283-289

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