New developments in evolutionary structure prediction algorithm USPEX

被引:1089
作者
Lyakhov, Andriy O. [1 ,2 ,3 ]
Oganov, Artem R. [1 ,2 ,3 ,4 ]
Stokes, Harold T. [5 ]
Zhu, Qiang [1 ,2 ,3 ]
机构
[1] SUNY Stony Brook, Dept Geosci, Stony Brook, NY 11794 USA
[2] SUNY Stony Brook, Dept Phys & Astron, Stony Brook, NY 11794 USA
[3] SUNY Stony Brook, New York Ctr Computat Sci, Stony Brook, NY 11794 USA
[4] Moscow MV Lomonosov State Univ, Dept Geol, Moscow 119992, Russia
[5] Brigham Young Univ, Dept Phys & Astron, Provo, UT 84602 USA
基金
美国国家科学基金会;
关键词
Crystal structure prediction; Cluster structure prediction; Particle swarm optimization; Evolutionary algorithms; Genetic algorithms; Global optimization; Fingerprint function; CRYSTAL-STRUCTURE PREDICTION; LENNARD-JONES CLUSTERS; GEOMETRY OPTIMIZATION; GENETIC ALGORITHMS; GLOBAL MINIMUM; SEARCH; PHASES;
D O I
10.1016/j.cpc.2012.12.009
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
We present new developments of the evolutionary algorithm USPEX for crystal structure prediction and its adaptation to cluster structure prediction. We show how to generate randomly symmetric structures, and how to introduce 'smart' variation operators, learning about preferable local environments. These and other developments substantially improve the efficiency of the algorithm and allow reliable prediction of structures with up to similar to 200 atoms in the unit cell. We show that an advanced version of the Particle Swarm Optimization (PSO) can be created on the basis of our method, but PSO is strongly outperformed by USPEX. We also show how ideas from metadynamics can be used in the context of evolutionary structure prediction for escaping from local minima. Our cluster structure prediction algorithm, using the ideas initially developed for crystals, also shows excellent performance and outperforms other state-of-the-art algorithms. (c) 2012 Elsevier B.V. All rights reserved.
引用
收藏
页码:1172 / 1182
页数:11
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