Comamonas koreensis sp nov., a non-motile species from wetland in Woopo, Korea

被引:45
作者
Chang, YH
Han, JI
Chun, JS
Lee, KC
Rhee, MS
Kim, YB
Bae, KS
机构
[1] Korea Res Inst Biosci & Biotechnol, Korean Collection Type Cultures, Taejon 305600, South Korea
[2] Korea Univ, Grad Sch Biotechnol, Seoul 136701, South Korea
[3] Seoul Natl Univ, Sch Biol Sci, Seoul 151742, South Korea
关键词
polyphasic taxonomy; 16S rDNA; taxonomy; Comamonas koreensis sp nov;
D O I
10.1099/00207713-52-2-377
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A bacterial strain, designated YH12(T), was isolated from a wetland sample collected from Woopo, Republic of Korea, and characterized using a polyphasic approach. Analysis of 16S rDNA indicated that the isolate formed a monophyletic clade with the members of the genus Comamonas. The closest phylogenetic relative among the valid species was Comamonas testosteroni, with 96.6% 16S rDNA similarity. The chemotaxonomic properties of the wetland isolate supported its membership of the genus Comamonas, as it contained ubiquinone Q-8 as a major respiratory quinone and hexadecanoic, methylene-hexadecanoic and octadecenoic acids as major cellular fatty acids. The G+C content of the DNA was 66 mol%. The isolate is a Gram-negative, nonpigmented, rod-shaped, oxidase- and catalase-positive, non-motile, nonendospore-forming and non-fermentative bacterium. The phenotypic properties of the isolate were compared with those of the type strains of Comamonas terrigena, C. testosteroni and Delftia acidovorans. A number of tests, including motility, can differentiate our isolate from related taxa. On the basis of the 16S rDNA phylogenetic, chemotaxonomic and phenotypic evidence given in this study, it is proposed that strain YH12(T) (= KCTC 12005(T) = IMSNU 11158(T)) be assigned as the type strain of a novel species of the genus Comamonas, Comamonas koreensis sp. nov.
引用
收藏
页码:377 / 381
页数:5
相关论文
共 22 条
[1]   A PHYLOGENETIC ANALYSIS OF THE GENUS NOCARDIA WITH 16S RIBOSOMAL-RNA GENE-SEQUENCES [J].
CHUN, JS ;
GOODFELLOW, M .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1995, 45 (02) :240-245
[2]  
Cole R. M., 1981, MANUAL METHODS GEN B, P34
[3]  
Craigie J, 1931, J IMMUNOL, V21, P417
[4]   COMAMONAS DAVIS AND PARK 1962 GEN-NOV, NOM REV EMEND, AND COMAMONAS-TERRIGENA HUGH 1962 SP-NOV, NOM REV [J].
DEVOS, P ;
KERSTERS, K ;
FALSEN, E ;
POT, B ;
GILLIS, M ;
SEGERS, P ;
DELEY, J .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1985, 35 (04) :443-453
[5]  
FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x
[6]  
Felsenstein J., 1993, PHYLIP PHYLOGENY INF
[7]   CONSTRUCTION OF PHYLOGENETIC TREES [J].
FITCH, WM ;
MARGOLIASH, E .
SCIENCE, 1967, 155 (3760) :279-+
[8]   TOWARD DEFINING COURSE OF EVOLUTION - MINIMUM CHANGE FOR A SPECIFIC TREE TOPOLOGY [J].
FITCH, WM .
SYSTEMATIC ZOOLOGY, 1971, 20 (04) :406-&
[9]   Bacterial diversity at surface water in three locations within the Baltic sea as revealed by culture-dependent molecular techniques [J].
Hantula, J ;
Koivula, TT ;
Luo, C ;
Bamford, DH .
JOURNAL OF BASIC MICROBIOLOGY, 1996, 36 (03) :163-176
[10]  
Jukes T. H., 1969, MAMMALIAN PROTEIN ME, P121, DOI DOI 10.1016/B978-1-4832-3211-9.50009-7