How scale-free are biological networks

被引:164
作者
Khanin, Raya [1 ]
Wit, Ernst [1 ]
机构
[1] Univ Glasgow, Dept Stat, Glasgow G12 8QW, Lanark, Scotland
关键词
scale-free; biological networks;
D O I
10.1089/cmb.2006.13.810
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The concept of scale-free network has emerged as a powerful unifying paradigm in the study of complex systems in biology and in physical and social studies. Metabolic, protein, and gene interaction networks have been reported to exhibit scale-free behavior based on the analysis of the distribution of the number of connections of the network nodes. Here we study 10 published datasets of various biological interactions and perform goodness-of-fit tests to determine whether the given data is drawn from the power-law distribution. Our analysis did not identify a single interaction network that has a nonzero probability of being drawn from the power-law distribution.
引用
收藏
页码:810 / 818
页数:9
相关论文
共 39 条
[1]   Extreme self-organization in networks constructed from gene expression data [J].
Agrawal, H .
PHYSICAL REVIEW LETTERS, 2002, 89 (26)
[2]   Error and attack tolerance of complex networks [J].
Albert, R ;
Jeong, H ;
Barabási, AL .
NATURE, 2000, 406 (6794) :378-382
[3]   Biological networks [J].
Alm, E ;
Arkin, AP .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2003, 13 (02) :193-202
[4]   Taking the mystery out of biological networks [J].
Aloy, P ;
Russell, RB .
EMBO REPORTS, 2004, 5 (04) :349-350
[5]   Classes of small-world networks [J].
Amaral, LAN ;
Scala, A ;
Barthélémy, M ;
Stanley, HE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (21) :11149-11152
[6]   Network biology:: Understanding the cell's functional organization [J].
Barabási, AL ;
Oltvai, ZN .
NATURE REVIEWS GENETICS, 2004, 5 (02) :101-U15
[7]   Similarities and differences in genome-wide expression data of six organisms [J].
Bergmann, S ;
Ihmels, J ;
Barkai, N .
PLOS BIOLOGY, 2004, 2 (01) :85-93
[8]   Expanding protein universe and its origin from the biological Big Bang [J].
Dokholyan, NV ;
Shakhnovich, B ;
Shakhnovich, EI .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (22) :14132-14136
[9]   Wrestling with pleiotropy: genomic and topological analysis of the yeast gene expression network [J].
Featherstone, DE ;
Broadie, K .
BIOESSAYS, 2002, 24 (03) :267-274
[10]   The small world of metabolism [J].
Fell, DA ;
Wagner, A .
NATURE BIOTECHNOLOGY, 2000, 18 (11) :1121-1122