OPINION e-Science: relieving bottlenecks in large-scale genome analyses

被引:13
作者
Craddock, Tracy [2 ]
Harwood, Colin R. [1 ]
Hallinan, Jennifer [2 ]
Wipat, Anil [2 ]
机构
[1] Newcastle Univ, Sch Med, Inst Cell & Mol Biosci, Newcastle Upon Tyne NE2 4HH, Tyne & Wear, England
[2] Newcastle Univ, Sch Comp Sci, Newcastle Upon Tyne NE1 7RU, Tyne & Wear, England
关键词
D O I
10.1038/nrmicro2031
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The development of affordable, high-throughput sequencing technology has led to a flood of publicly available bacterial genome-sequence data. The availability of multiple genome sequences presents both an opportunity and a challenge for microbiologists, and new computational approaches are needed to extract the knowledge that is required to address specific biological problems and to analyse genomic data. The field of e-Science is maturing, and Grid-based technologies can help address this challenge.
引用
收藏
页码:948 / U12
页数:8
相关论文
共 43 条
  • [1] Generalized simulated annealing applied to protein folding studies
    Agostini, Flavia P.
    Soares-Pinto, Diogo De O.
    Moret, Marcelo A.
    Osthoff, Carla
    Pascutti, Pedro G.
    [J]. JOURNAL OF COMPUTATIONAL CHEMISTRY, 2006, 27 (11) : 1142 - 1155
  • [2] BASIC LOCAL ALIGNMENT SEARCH TOOL
    ALTSCHUL, SF
    GISH, W
    MILLER, W
    MYERS, EW
    LIPMAN, DJ
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) : 403 - 410
  • [3] Improved prediction of signal peptides: SignalP 3.0
    Bendtsen, JD
    Nielsen, H
    von Heijne, G
    Brunak, S
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2004, 340 (04) : 783 - 795
  • [4] Protein targeting by the bacterial twin-arginine translocation (Tat) pathway
    Berks, BC
    Palmer, T
    Sargent, F
    [J]. CURRENT OPINION IN MICROBIOLOGY, 2005, 8 (02) : 174 - 181
  • [5] Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator
    Castro, AG
    Thoraval, S
    Garcia, LJ
    Ragan, MA
    [J]. BMC BIOINFORMATICS, 2005, 6 (1)
  • [6] CHAPMAN B, 2000, ACM SIGBIO NEWSLETTE, V20, P15
  • [7] xBASE2:: a comprehensive resource for comparative bacterial genomics
    Chaudhuri, Roy R.
    Loman, Nicholas J.
    Snyder, Lori A. S.
    Bailey, Christopher M.
    Stekel, Dov J.
    Pallen, Mark J.
    [J]. NUCLEIC ACIDS RESEARCH, 2008, 36 : D543 - D546
  • [8] Craddock T, 2006, PROCEEDINGS OF THE UK E-SCIENCE ALL HANDS MEETING 2006, P788
  • [9] Unraveling the Web services Web - An introduction to SOAP, WSDL, and UDDI
    Curbera, F
    Duftler, M
    Khalaf, R
    Nagy, W
    Mukhi, N
    Weerawarana, S
    [J]. IEEE INTERNET COMPUTING, 2002, 6 (02) : 86 - 93
  • [10] De Roure D, 2007, P IEEE INT C E-SCI, P603