The chromophore of asFP595: A theoretical study

被引:20
作者
Amat, P
Granucci, G
Buda, F
Persico, M
Tozzini, V
机构
[1] CNR, INFM, NEST, I-56126 Pisa, Italy
[2] Univ Pisa, Dipartimento Chim & Chim Ind, I-56126 Pisa, Italy
[3] Leiden Univ, Leiden Inst Chem, NL-2300 RA Leiden, Netherlands
关键词
D O I
10.1021/jp057071a
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We investigate the electronic and structural properties of the chromophore of the asCP/asFP595, a newly discovered protein of the ( green) fluorescent protein family. The use of theoretical methods with different degrees of accuracy and efficiency (DFT, TDDFT, CASSCF and perturbative corrections) allows us to compare the properties of a large number of hypothetic molecular models for the chromophore. The models are sorted on the basis of the relative stability and through a comparison with the experimental values of the excitation energy. Our study indicates that the most probable structure of the photoactive moiety in the protein and in water is the one resulting from the GFP-like rather than the "alternative" cyclization scheme.
引用
收藏
页码:9348 / 9353
页数:6
相关论文
共 38 条
[1]   Structure and mechanism of the reversible photoswitch of a fluorescent protein [J].
Andresen, M ;
Wahl, MC ;
Stiel, AC ;
Gräter, F ;
Schäfer, LV ;
Trowitzsch, S ;
Weber, G ;
Eggeling, C ;
Grubmüller, H ;
Hell, SW ;
Jakobs, S .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (37) :13070-13074
[2]   Introduction of n-electron valence states for multireference perturbation theory [J].
Angeli, C ;
Cimiraglia, R ;
Evangelisti, S ;
Leininger, T ;
Malrieu, JP .
JOURNAL OF CHEMICAL PHYSICS, 2001, 114 (23) :10252-10264
[3]   N-electron valence state perturbation theory:: a fast implementation of the strongly contracted variant [J].
Angeli, C ;
Cimiraglia, R ;
Malrieu, JP .
CHEMICAL PHYSICS LETTERS, 2001, 350 (3-4) :297-305
[4]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100
[5]   Interconversion of Anthozoa GFP-like fluorescent and non-fluorescent proteins by mutagenesis [J].
Bulina, Maria E. ;
Chudakov, Dmitry M. ;
Mudrik, Nikolay N. ;
Lukyanov, Konstantin A. .
BMC BIOCHEMISTRY, 2002, 3 :1-8
[6]   UNIFIED APPROACH FOR MOLECULAR-DYNAMICS AND DENSITY-FUNCTIONAL THEORY [J].
CAR, R ;
PARRINELLO, M .
PHYSICAL REVIEW LETTERS, 1985, 55 (22) :2471-2474
[7]   Kindling fluorescent proteins for precise in vivo photolabeling [J].
Chudakov, DM ;
Belousov, VV ;
Zaraisky, AG ;
Novoselov, VV ;
Staroverov, DB ;
Zorov, DB ;
Lukyanov, S ;
Lukyanov, KA .
NATURE BIOTECHNOLOGY, 2003, 21 (02) :191-194
[8]   Chromophore environment provides clue to "kindling fluorescent protein" riddle [J].
Chudakov, DM ;
Feofanov, AV ;
Mudriku, NN ;
Lukyanov, S ;
Lukyanov, KA .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (09) :7215-7219
[9]  
Frisch M.J., 2004, Gaussian 03
[10]  
Revision C.02