Diagnosis of mitochondrial disorders by concomitant next-generation sequencing of the exome and mitochondrial genome

被引:58
作者
Dinwiddie, Darrell L. [1 ,2 ,3 ,4 ,5 ,6 ]
Smith, Laurie D. [1 ,2 ,4 ]
Miller, Neil A. [1 ,2 ]
Atherton, Andrea M. [1 ,2 ]
Farrow, Emily G. [1 ,2 ,4 ]
Strenk, Meghan E. [2 ]
Soden, Sarah E. [1 ,2 ,4 ]
Saunders, Carol J. [1 ,2 ,3 ,4 ]
Kingsmore, Stephen F. [1 ,2 ,3 ,4 ]
机构
[1] Childrens Mercy Hosp, Ctr Pediat Genom Med, Kansas City, MO 64108 USA
[2] Childrens Mercy Hosp, Dept Pediat, Kansas City, MO 64108 USA
[3] Childrens Mercy Hosp, Dept Pathol, Kansas City, MO 64108 USA
[4] Univ Missouri, Sch Med, Kansas City, MO 64108 USA
[5] Univ New Mexico, Hlth Sci Ctr, Dept Pediat, Albuquerque, NM 87131 USA
[6] Univ New Mexico, Hlth Sci Ctr, Clin Translat Sci Ctr, Albuquerque, NM 87131 USA
关键词
Mitochondrial genome; Exome; Next-generation sequencing; Leigh syndrome; Homoplasmy; MT-ATP6; Lactic academia; Mitochondrial complex I; Inborn error of metabolism; CoQ10; deficiency; Molecular diagnostics; COMPLEX-I DEFICIENCY; PRENATAL-DIAGNOSIS; DNA MUTATIONS; GENE MUTATION; DISCOVERY; STANDARDS; VARIANTS; DISEASES; DATABASE; NDUFV1;
D O I
10.1016/j.ygeno.2013.04.013
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 [微生物学]; 090105 [作物生产系统与生态工程];
摘要
Mitochondrial diseases are notoriously difficult to diagnose due to extreme locus and allelic heterogeneity, with both nuclear and mitochondrial genomes potentially liable. Using exome sequencing we demonstrate the ability to rapidly and cost effectively evaluate both the nuclear and mitochondrial genomes to obtain a molecular diagnosis for four patients with three distinct mitochondrial disorders. One patient was found to have Leigh syndrome due to a mutation in MT-ATP6, two affected siblings were discovered to be compound heterozygous for mutations in the NDUFV1 gene, which causes mitochondrial complex I deficiency, and one patient was found to have coenzyme Q10 deficiency due to compound heterozygous mutations in COQ2. In all cases conventional diagnostic testing failed to identify a molecular diagnosis. We suggest that additional studies should be conducted to evaluate exome sequencing as a primary diagnostic test for mitochondrial diseases, including those due to mtDNA mutations. (C) 2013 Elsevier Inc. All rights reserved.
引用
收藏
页码:148 / 156
页数:9
相关论文
共 50 条
[1]
Exome sequencing reveals a pallidin mutation in a Hermansky-Pudlak-like primary immunodeficiency syndrome [J].
Badolato, Raffaele ;
Prandini, Alberto ;
Caracciolo, Sonia ;
Colombo, Francesca ;
Tabellini, Giovanna ;
Giacomelli, Mauro ;
Cantarini, Maria E. ;
Pession, Andrea ;
Bell, Callum J. ;
Dinwiddie, Darrell L. ;
Miller, Neil A. ;
Hateley, Shannon L. ;
Saunders, Carol J. ;
Zhang, Lu ;
Schroth, Gary P. ;
Plebani, Alessandro ;
Parolini, Silvia ;
Kingsmore, Stephen F. .
BLOOD, 2012, 119 (13) :3185-3187
[2]
Carrier Testing for Severe Childhood Recessive Diseases by Next-Generation Sequencing [J].
Bell, Callum J. ;
Dinwiddie, Darrell L. ;
Miller, Neil A. ;
Hateley, Shannon L. ;
Ganusova, Elena E. ;
Mudge, Joann ;
Langley, Ray J. ;
Zhang, Lu ;
Lee, Clarence C. ;
Schilkey, Faye D. ;
Sheth, Vrunda ;
Woodward, Jimmy E. ;
Peckham, Heather E. ;
Schroth, Gary P. ;
Kim, Ryan W. ;
Kingsmore, Stephen F. .
SCIENCE TRANSLATIONAL MEDICINE, 2011, 3 (65)
[3]
Large-scale deletion and point mutations of the nuclear NDUFV1 and NDUFS1 genes in mitochondrial complex I deficiency [J].
Bénit, P ;
Chretien, D ;
Kadhom, N ;
de Lonlay-Debeney, P ;
Cormier-Daire, V ;
Cabral, A ;
Peudenier, S ;
Rustin, P ;
Munnich, A ;
Rötig, A .
AMERICAN JOURNAL OF HUMAN GENETICS, 2001, 68 (06) :1344-1352
[4]
Whole-exome sequencing identifies recessive WDR62 mutations in severe brain malformations [J].
Bilguvar, Kaya ;
Ozturk, Ali Kemal ;
Louvi, Angeliki ;
Kwan, Kenneth Y. ;
Choi, Murim ;
Tatli, Burak ;
Yalnizoglu, Dilek ;
Tuysuz, Beyhan ;
Caglayan, Ahmet Okay ;
Gokben, Sarenur ;
Kaymakcalan, Hande ;
Barak, Tanyeri ;
Bakircioglu, Mehmet ;
Yasuno, Katsuhito ;
Ho, Winson ;
Sanders, Stephan ;
Zhu, Ying ;
Yilmaz, Sanem ;
Dincer, Alp ;
Johnson, Michele H. ;
Bronen, Richard A. ;
Kocer, Naci ;
Per, Hueseyin ;
Mane, Shrikant ;
Pamir, Mehmet Necmettin ;
Yalcinkaya, Cengiz ;
Kumandas, Sefer ;
Topcu, Meral ;
Ozmen, Meral ;
Sestan, Nenad ;
Lifton, Richard P. ;
State, Matthew W. ;
Gunel, Murat .
NATURE, 2010, 467 (7312) :207-U93
[5]
Sporadic intragenic inversion of the mitochondrial DNA MTND1 gene causing fatal infantile lactic acidosis [J].
Blakely, EL ;
Rennie, KJ ;
Jones, L ;
Elstner, M ;
Chrzanowska-Lightowlers, ZMA ;
White, CB ;
Shield, JPH ;
Pilz, DT ;
Turnbull, DM ;
Poulton, J ;
Taylor, RW .
PEDIATRIC RESEARCH, 2006, 59 (03) :440-444
[6]
Whole-Exome-Sequencing-Based Discovery of Human FADD Deficiency [J].
Bolze, Alexandre ;
Byun, Minji ;
McDonald, David ;
Morgan, Neil V. ;
Abhyankar, Avinash ;
Premkumar, Lakshmanane ;
Puel, Anne ;
Bacon, Chris M. ;
Rieux-Laucat, Frederic ;
Pang, Ki ;
Britland, Alison ;
Abel, Laurent ;
Cant, Andrew ;
Maher, Eamonn R. ;
Riedl, Stefan J. ;
Hambleton, Sophie ;
Casanova, Jean-Laurent .
AMERICAN JOURNAL OF HUMAN GENETICS, 2010, 87 (06) :873-881
[7]
BROWN MD, 1992, AM J HUM GENET, V51, P378
[8]
BROWN MD, 1992, GENETICS, V130, P163
[9]
Molecular Diagnosis of Infantile Mitochondrial Disease with Targeted Next-Generation Sequencing [J].
Calvo, Sarah E. ;
Compton, Alison G. ;
Hershman, Steven G. ;
Lim, Sze Chern ;
Lieber, Daniel S. ;
Tucker, Elena J. ;
Laskowski, Adrienne ;
Garone, Caterina ;
Liu, Shangtao ;
Jaffe, David B. ;
Christodoulou, John ;
Fletcher, Janice M. ;
Bruno, Damien L. ;
Goldblatt, Jack ;
DiMauro, Salvatore ;
Thorburn, David R. ;
Mootha, Vamsi K. .
SCIENCE TRANSLATIONAL MEDICINE, 2012, 4 (118)
[10]
Chinnery P.F., 1993, MITOCHONDRIAL DISORD