A draft genome sequence of the pulse crop chickpea (Cicer arietinumL.)

被引：317

作者：

Jain, Mukesh ^{[1
]}

Misra, Gopal ^{[1
]}

Patel, Ravi K. ^{[1
]}

Priya, Pushp ^{[1
]}

Jhanwar, Shalu ^{[1
]}

Khan, Aamir W. ^{[1
]}

Shah, Niraj ^{[1
]}

Singh, Vikas K. ^{[1
]}

Garg, Rohini ^{[1
]}

Jeena, Ganga ^{[1
]}

Yadav, Manju ^{[1
]}

Kant, Chandra ^{[1
]}

Sharma, Priyanka ^{[1
]}

Yadav, Gitanjali ^{[1
]}

Bhatia, Sabhyata ^{[1
]}

Tyagi, Akhilesh K. ^{[1
]}

Chattopadhyay, Debasis ^{[1
]}

机构：

[1] Natl Inst Plant Genome Res, New Delhi 110067, India

来源：

PLANT JOURNAL | 2013年 / 74卷 / 05期

关键词：

chickpea; Cicer arietinum; ICC4958; desi-type; genome sequence; gene expression; marker resource; technical advance; LINEAGE-SPECIFIC GENES; PHYLOGENETIC ANALYSIS; LEGUME; MODEL; EVOLUTION; IDENTIFICATION; DIVERGENCE; DIVERSITY; RESOURCE; CONSEQUENCES;

D O I：

10.1111/tpj.12173

中图分类号：

Q94 [植物学];

学科分类号：

071001 ;

摘要：

Cicer arietinum L. (chickpea) is the third most important food legume crop. We have generated the draft sequence of a desi-type chickpea genome using next-generation sequencing platforms, bacterial artificial chromosome end sequences and a genetic map. The 520-Mb assembly covers 70% of the predicted 740-Mb genome length, and more than 80% of the gene space. Genome analysis predicts the presence of 27571 genes and 210Mb as repeat elements. The gene expression analysis performed using 274million RNA-Seq reads identified several tissue-specific and stress-responsive genes. Although segmental duplicated blocks are observed, the chickpea genome does not exhibit any indication of recent whole-genome duplication. Nucleotide diversity analysis provides an assessment of a narrow genetic base within the chickpea cultivars. We have developed a resource for genetic markers by comparing the genome sequences of one wild and three cultivated chickpea genotypes. The draft genome sequence is expected to facilitate genetic enhancement and breeding to develop improved chickpea varieties.

引用

页码：715 / 729

页数：15

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