Analysis of simulated NMR order parameters for lipid bilayer structure determination

被引:93
作者
Petrache, HI
Tu, KC
Nagle, JF
机构
[1] Carnegie Mellon Univ, Dept Phys, Pittsburgh, PA 15213 USA
[2] Carnegie Mellon Univ, Dept Biol Sci, Pittsburgh, PA 15213 USA
[3] Univ Calif San Francisco, Dept Chem Pharmacol, San Francisco, CA 94143 USA
关键词
D O I
10.1016/S0006-3495(99)77403-5
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
The conventional formula for relating CD2 average order parameters [S-n] to average methylenic travel [D-n] is flawed when compared to molecular dynamics simulations of dipalmitoylphosphatidylcholine. Inspired by the simulated probability distribution functions, a new formula is derived that satisfactorily relates these quantities. This formula is used to obtain the average chain length [L-C], and the result agrees with the direct simulation result for [L-C]. The simulation also yields a hydrocarbon thickness 2[D-C]. The result [L-C] = [D-C] is consistent with a model of chain packing with both early chain termination and partial interdigitation of chains from opposing monolayers. The actual simulated area per lipid [A] is easily obtained from the order parameters. However, when this method is applied to NMR order parameter data from dimyristoylphosphatidylcholine, the resulting [A] is 10% larger than the currently accepted value.
引用
收藏
页码:2479 / 2487
页数:9
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