The effects of pH on DNA methylation state:: In vitro and post-mortem brain studies

被引:35
作者
Ernst, Carl [1 ,2 ,3 ]
McGowan, Patrick O. [2 ,3 ,5 ]
Deleva, Vesselina [1 ]
Meaney, Michael J. [2 ,3 ,5 ]
Szyf, Moshe [4 ]
Turecki, Gustavo [1 ,2 ,5 ]
机构
[1] McGill Univ, McGill Grp Suicide Studies, Montreal, PQ, Canada
[2] McGill Univ, Dept Neurol & Neurosurg, Montreal, PQ, Canada
[3] McGill Univ, CIHR Program Genes Environm & Hlth, Montreal, PQ, Canada
[4] McGill Univ, Dept Pharmacol & Therapeut, Montreal, PQ, Canada
[5] McGill Univ, Dept Psychiat, Montreal, PQ, Canada
关键词
post-mortem; brain; pH; methylation;
D O I
10.1016/j.jneumeth.2008.06.027
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Assessment of methylation state of DNA extracted from brain is becoming one of the most investigated issues in the study of epigenetics and psychopathology. pH effects in brain are known to affect gene transcription, though pH effects on DNA methylation state are unknown. Vie demonstrate in vitro using an artificially methylated plasmid that DNA methylation state remains stable, even under extreme pH conditions. Next, using two different genomic regions from human DNA, we assess methylation state from both cortical and sub-cortical brain regions using subjects with varying pH levels. No correlation was found between DNA methylation state and pH. These results suggest that DNA methylation state is stable in post-mortem brain. Crown Copyright (C) 2008 Published by Elsevier B.V. All rights reserved.
引用
收藏
页码:123 / 125
页数:3
相关论文
共 13 条
[1]   Methylomics in psychiatry: Modulation of gene-environment interactions may be through DNA methylation [J].
Abdolmaleky, HM ;
Smith, CL ;
Faraone, SV ;
Shafa, R ;
Stone, W ;
Glatt, SJ ;
Tsuang, MT .
AMERICAN JOURNAL OF MEDICAL GENETICS PART B-NEUROPSYCHIATRIC GENETICS, 2004, 127B (01) :51-59
[2]  
Alafuzoff I, 1993, J Neural Transm Suppl, V39, P235
[3]   Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2 [J].
Amir, RE ;
Van den Veyver, IB ;
Wan, M ;
Tran, CQ ;
Francke, U ;
Zoghbi, HY .
NATURE GENETICS, 1999, 23 (02) :185-188
[4]  
CLARK SJ, 1994, NUCLEIC ACIDS RES, V22, P2990, DOI 10.1093/nar/22.15.2990
[5]   Risk factors for suicide completion in major depression: A case-control study of impulsive and aggressive behaviors in men [J].
Dumais, A ;
Lesage, AD ;
Alda, M ;
Rouleau, G ;
Dumont, M ;
Chawky, N ;
Roy, M ;
Mann, JJ ;
Benkelfat, C ;
Turecki, G .
AMERICAN JOURNAL OF PSYCHIATRY, 2005, 162 (11) :2116-2124
[6]   Altered gene expression of brain-derived neurotrophic factor and receptor tyrosine kinase B in postmortem brain of suicide subjects [J].
Dwivedi, Y ;
Rizavi, HS ;
Conley, RR ;
Roberts, RC ;
Tamminga, CA ;
Pandey, GN .
ARCHIVES OF GENERAL PSYCHIATRY, 2003, 60 (08) :804-815
[7]   Role of human ribosomal RNA (rRNA) promoter methylation and of Methyl-CpG-binding protein MBD2 in the suppression of rRNA gene expression [J].
Ghoshal, K ;
Majumder, S ;
Datta, J ;
Motiwala, T ;
Bai, S ;
Sharma, SM ;
Frankel, W ;
Jacob, ST .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2004, 279 (08) :6783-6793
[8]   Transient cyclical methylation of promoter DNA [J].
Kangaspeska, Sara ;
Stride, Brenda ;
Metivier, Raphael ;
Polycarpou-Schwarz, Maria ;
Ibberson, David ;
Carmouche, Richard Paul ;
Benes, Vladimir ;
Gannon, Frank ;
Reid, George .
NATURE, 2008, 452 (7183) :112-U14
[9]   Cyclical DNA methylation of a transcriptionally active promoter [J].
Metivier, Raphael ;
Gallais, Rozenn ;
Tiffoche, Christophe ;
Le Peron, Christine ;
Jurkowska, Renata Z. ;
Carmouche, Richard P. ;
Ibberson, David ;
Barath, Peter ;
Demay, Florence ;
Reid, George ;
Benes, Vladimir ;
Jeltsch, Albert ;
Gannon, Frank ;
Salbert, Gilles .
NATURE, 2008, 452 (7183) :45-U2
[10]   Molecular studies of major depressive disorder: the epigenetic perspective [J].
Mill, J. ;
Petronis, A. .
MOLECULAR PSYCHIATRY, 2007, 12 (09) :799-814