Water molecules in a protein cavity detected by a statistical-mechanical theory

被引:138
作者
Imai, T
Hiraoka, R
Kovalenko, A
Hirata, F [1 ]
机构
[1] Inst Mol Sci, Dept Theoret Studies, Okazaki, Aichi 4448585, Japan
[2] Univ Alberta, Dept Mech Engn, Edmonton, AB T6G 2V4, Canada
[3] Inst Mol Sci, Natl Inst Nanotechnol, Natl Res Council Canada, Okazaki, Aichi 4448585, Japan
[4] Ritsumeikan Univ, Dept Biosci & Bioinformat, Shiga 5258577, Japan
关键词
D O I
10.1021/ja054434b
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Four water molecules confined in a small cavity of hen egg-white lysozyme were detected by means of the three-dimensional (3D) RISM theory, a statistical-mechanical theory of molecular solutions. This is the first theoretical realization of confined molecules in a protein without making nonsense tricks, such as placing the molecules in the space a priori. Possible impacts which the result may have on biochemistry and biophysics, including the molecular recognition, enzymatic reactions, etc., are discussed. Copyright © 2005 American Chemical Society.
引用
收藏
页码:15334 / 15335
页数:2
相关论文
共 12 条
[1]  
[Anonymous], 2012, Introduction to protein structure
[2]   An integral equation to describe the solvation of polar molecules in liquid water [J].
Beglov, D ;
Roux, B .
JOURNAL OF PHYSICAL CHEMISTRY B, 1997, 101 (39) :7821-7826
[3]   VMD: Visual molecular dynamics [J].
Humphrey, W ;
Dalke, A ;
Schulten, K .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 1996, 14 (01) :33-38
[4]   Partial molar volume of proteins studied by the three-dimensional reference interaction site model theory [J].
Imai, T ;
Kovalenko, A ;
Hirata, F .
JOURNAL OF PHYSICAL CHEMISTRY B, 2005, 109 (14) :6658-6665
[5]   Solvation thermodynamics of protein studied by the 3D-RISM theory [J].
Imai, T ;
Kovalenko, A ;
Hirata, F .
CHEMICAL PHYSICS LETTERS, 2004, 395 (1-3) :1-6
[6]   Three-dimensional density profiles of water in contact with a solute of arbitrary shape: A RISM approach [J].
Kovalenko, A ;
Hirata, F .
CHEMICAL PHYSICS LETTERS, 1998, 290 (1-3) :237-244
[7]  
Kovalenko A, 2003, UNDERS CH R, V24, P169
[8]   Energetic optimization of ion conduction rate by the K+ selectivity filter [J].
Morais-Cabral, JH ;
Zhou, YF ;
MacKinnon, R .
NATURE, 2001, 414 (6859) :37-42
[9]   Water-protein interactions from high-resolution protein crystallography [J].
Nakasako, M .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2004, 359 (1448) :1191-1204
[10]   Structural changes of water in the Schiff base region of bacteriorhodopsin: Proposal of a hydration switch models [J].
Tanimoto, T ;
Furutani, Y ;
Kandori, H .
BIOCHEMISTRY, 2003, 42 (08) :2300-2306